Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23530 50 / 3e-06 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23510 50 / 3e-06 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT5G14220 44 / 0.0003 HEMG2, MEE61, PPO2 MATERNAL EFFECT EMBRYO ARREST 61, Flavin containing amine oxidoreductase family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002549 [exp] 1083 / 0 AT4G05160 74 / 5e-13 AMP-dependent synthetase and ligase family protein (.1) Lus10029495 [exp] 47 / 5e-05 AT5G13700 587 / 0.0 polyamine oxidase 1 (.1) Lus10003474 [exp] 45 / 0.0001 AT5G07800 623 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10039599 [exp] 44 / 0.0003 AT5G13700 693 / 0.0 polyamine oxidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085701 [exp] 865 / 0 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.003G210701 [exp] 861 / 0 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.003G210600 [exp] 860 / 0 AT1G20480 91 / 4e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.001G263400 [exp] 47 / 4e-05 AT5G13700 734 / 0.0 polyamine oxidase 1 (.1) Potri.012G067500 [exp] 46 / 6e-05 AT5G07800 696 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.008G170300 [exp] 45 / 0.0002 AT3G23510 1408 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067900 [exp] 45 / 0.0002 AT3G23530 1392 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G227200 [exp] 43 / 0.0006 AT3G10390 1135 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.008G035200 [exp] 43 / 0.0007 AT3G10390 1152 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.009G058200 [exp] 42 / 0.001 AT5G13700 756 / 0.0 polyamine oxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10027378 pacid=23145351 polypeptide=Lus10027378 locus=Lus10027378.g ID=Lus10027378.BGIv1.0 annot-version=v1.0 ATGGATCCGACGGTTCCAATTGACGATCAGTTCTCCAAGCTTCATCCAACTCTGCCATTGGACACAAGATTCTGCGTACTAGGAGCCGGCCCGAGCGGCG TTTCGGCAGCTTATGCACTGGCTAAGCTTGGTTACAGGAATGTAACCGTCCTGGAGAAGCATCACACTGTTGGAGGCTTGTGTGAATCTGTTGACATTGA AGGCAGGGTTTATGATTTGGGGGGACAAGTTCTGGCGAAGAACAGTGCGCCTGTCATATTTCACTTGGCGAAGGAAACTGGATCAGAGCTGGAAGAGATG GACTCCCACAAGCTTGCCTTGATTGATAGTTCTACAGGGAAGTATCAGGATAATAAAGTTGCTGACGATTATGTCTCTGTCATTTCCCTCACGTTGGAAC TCCAGGACAAGGCAAAGGCTACCGGGAAAATTGGGGTTCATGCAGTGAGTGAATTGGCTTCAGATTTGACACCAACTTACTTGGAATCCCATGGGCTCAA GACTGTACCAAAATCTGTAGCCTATGGGTACACTGCTTCAGGATATGGGTTTGTTCAGGATATGCCGTACGCTTACATCCACGAGTTCACCAGAACTTCA ATGGCTGGAAAGATCAGGAGGTTTAAGGACGGATACACCAGTCTGTGGAAGAAGCTGAGCGAGTCGCTCCCAATCGAAATCCATTGTCAGGCTGAAGTGC AGGCGATTCGACGCAATCCTGATGTTGTTAGAGTTGATGTTAGGAGGAGTAACGGTCGAGTTGAAACCTTGGAGTTTGATAAGATCATTGTGTCTGGCTC TTTTCCTTTCAGAACTGGGAAAACCTACAAATCATCGATCAATCACTCGTCAGCAGCCGAAGATGAAGTGATGGACCTCAGTGACCTTGAAAAGGAGTTG TTTAGTAAAGTTCAGACAATCGACTATTACACCACAGCTGTGAAGATCAAAGGACTAGAAGATATGCCAGTTGGGTTTTACTACTTTGGGGAGTTCATGG AGGATCCTGCAACAATCGGACACCCTATCGCATTGCAGAAGTACTATGCTGATTCTGATATCTTCTTGTTTTGGTCCTATGGAAACTCAGCTGACATCAT GGGACCAACTGTAACTGAGCTTGCCCTCAAAGTTGTTGCATCCATGGGAGCAAAAGCTGAGCAGGTTATTCTGCAACGTAGATTCAAGTACTTCCCTCAT GTTTGCAGCGGAGATATGAAGAACGGGTTCTATGAGAGACTCGAAGATGAACTTCAAGGGCAAAGGAATACACTTTATGTTGGTGGGCTTATGGCATTTG AGCTCACAGAGAGGAACTCATCTTATTCCATGGCTCTCATCTGCAAGCATTTTGCAAATGACAATCCATTACCCATGTTTCCTTATGCTAAGAGCTTGTT CTCGCTACAATCCGATATTCGCACCAGGAGCCTGCAATATCCTAGGGAGATTCCAGGAGTGGAGTTCCCAGAACTTCCTAGCCTTGACGCATACCTGAAA CATTGGGGAACTTCAACATCCACAAGAGAAAAGACATTATATTCATGGATCAATGAAGAAGGGGCAGTTGTATCCCAGAGGACTTACGGTGAGCTAAACG ACAATGCTGCTTCCATTGCTCATAAGCTCTTGACGAGTAGAAAACCAGTTATCAAGGCTGGTCCCACCAGATCCAATGCAAAGAGGTGGCCAAGCTCTGT TGAAGATTGA
AA sequence Show only first row Show all	>Lus10027378 pacid=23145351 polypeptide=Lus10027378 locus=Lus10027378.g ID=Lus10027378.BGIv1.0 annot-version=v1.0 MDPTVPIDDQFSKLHPTLPLDTRFCVLGAGPSGVSAAYALAKLGYRNVTVLEKHHTVGGLCESVDIEGRVYDLGGQVLAKNSAPVIFHLAKETGSELEEM DSHKLALIDSSTGKYQDNKVADDYVSVISLTLELQDKAKATGKIGVHAVSELASDLTPTYLESHGLKTVPKSVAYGYTASGYGFVQDMPYAYIHEFTRTS MAGKIRRFKDGYTSLWKKLSESLPIEIHCQAEVQAIRRNPDVVRVDVRRSNGRVETLEFDKIIVSGSFPFRTGKTYKSSINHSSAAEDEVMDLSDLEKEL FSKVQTIDYYTTAVKIKGLEDMPVGFYYFGEFMEDPATIGHPIALQKYYADSDIFLFWSYGNSADIMGPTVTELALKVVASMGAKAEQVILQRRFKYFPH VCSGDMKNGFYERLEDELQGQRNTLYVGGLMAFELTERNSSYSMALICKHFANDNPLPMFPYAKSLFSLQSDIRTRSLQYPREIPGVEFPELPSLDAYLK HWGTSTSTREKTLYSWINEEGAVVSQRTYGELNDNAASIAHKLLTSRKPVIKAGPTRSNAKRWPSSVED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Lus10027378 [exp]	0	1
AT4G05160			AMP-dependent synthetase and l...		Lus10002549 [exp]	2.2	0.8110
AT4G05160			AMP-dependent synthetase and l...		Lus10027377 [exp]	6.7	0.7756
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10025128 [exp]	7.7	0.7966
AT1G13570			F-box/RNI-like superfamily pro...		Lus10016472 [exp]	8.2	0.6848
AT1G53035			unknown protein		Lus10018600 [exp]	10.0	0.7429
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10011018 [exp]	13.4	0.7327
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10030349 [exp]	14.3	0.7630
AT5G65550			UDP-Glycosyltransferase superf...		Lus10008956 [exp]	14.7	0.7873
AT1G29350			Kinase-related protein of unkn...		Lus10000188 [exp]	15.1	0.7388
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020722 [exp]	15.6	0.7496

Compare expression of checked genes

Lus10027378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.