Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45140 843 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G72520 686 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G17420 683 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G67560 647 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G55020 612 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 572 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002547 [exp] 1457 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10041646 [exp] 1172 / 0 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10039094 [exp] 963 / 0 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031810 [exp] 954 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002545 [exp] 897 / 0 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10032087 [exp] 843 / 0 AT3G45140 894 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031236 [exp] 779 / 0 AT3G45140 805 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031809 [exp] 720 / 0 AT3G45140 753 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10013151 [exp] 696 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G046200 [exp] 1013 / 0 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015500 [exp] 1010 / 0 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015400 [exp] 992 / 0 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.009G022400 [exp] 975 / 0 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 891 / 0 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.008G178000 [exp] 699 / 0 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.010G057100 [exp] 692 / 0 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G167700 [exp] 692 / 0 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.013G022000 [exp] 604 / 0 AT1G55020 1311 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032600 [exp] 598 / 0 AT1G55020 1284 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10027379 pacid=23145457 polypeptide=Lus10027379 locus=Lus10027379.g ID=Lus10027379.BGIv1.0 annot-version=v1.0 ATGATCTTGGAGCTCATTCCCGCCGACCTTGATTCAAATGGAAAGGAAAAGTCAACGGTAAGCTCGTTCGCACACTTCGCTGGCGTGAATGGGTCGGAGA TCAGATACGAGGCATCCTTCGGCCTTCCCTCCGACTTCGGAACGGTCGGAGCGATGCGCGTCGAAAACCTGCATATTAGGGAGATGTTTCTCAAGGACAT CGCCATTTCCGGCTTCCCCAACGGAACCGTCAACATCGAGTGTGAGTCCTGGGTTCCACCCAAACTCTCCGGCAAGCCTAAGAGGATTTTCTTCACAACC AAGTCGTACTTGCCATCTGACACGCCAACTGGATTGAAGAAGCTGCGAAGTGATGAACTTGTAGTATTGCGAGGGAGTGGTCAAGGTGAGAGGAAGAAAG GTGATAGGATATACGACTATGACGTTTACAATGATCTCGGGTCACCTGATTTAAGTGCCGGTTTGAAGAGACCTGTATTGGGTGGCAAAGAGCATCCTTA CCCAAGGCGTTGCAGATCAGGACGACAACGATCAACCAAAGATCCGGAGTCAGAGTCAAGGGGTATTTACTTCTATGTGCCTCGGGATGAAGAGTTCTCT GAAATTAAGACTGCTCAATTTGGTGCCAAGACATTGTACTCGGTTCTACATGCCTTGGTGCCAACTCTTGAAACCATCCTCATCGACAAGGACCTTGGAT TCCCACACTTCACTGCCATCAATGAGATGTTCGATCAAGGACTTAACTTGCCTCCCTACTCTCAAGCTACTTTAGTATCACTCCTCCCTACGCTCATCAG GAATTCCGCTGAAGCAAGCAATGACGTTTTGCAGTTTGAGGTCCCTCCAACTATGGACAGAAACAGCTTTTTCTGGTTTACCGATGAGGAGTTTGCTCGC CAGACACTAGCTGGCGTAAACCCATGCACCCTACAATTGATCACGGAATGGCCAATAAAGGGTAATCTGGACCCATCTGTGTATGGTCCGCAAGAGTCTG GAATCACTAAAGAACTTATTGAGAGAGAAATCAAAGGTTATACAACATTAGAGGAGAACTTTACTAACCTTACAGTACCTCTTGGTACACCGATGGATGG GAGGCCACAGTGGAAGAAAGTTTATGTACCGAATTTTTCTTCTGCTACAGATGTCTGGTTGTGGAGGCTTGCCAAAGCTCATGTCCTTTCTCATGACTCT GCCTATCACCAACTTATTAGTCACTGGCTCAGAACTCATTGTTGCACAGAACCGTACATAATTGCAGCAAAACGCCAACTTAGTGCTATGCATCCCATCC ACCGATTGTTGAGCCCTCACTTCCGGTACACTATGGAAATTAATGCACTAGCACGACAAGCCCTTATCAACGCTGGTGGAGTTATTGAATCAACTTTCTC CCCTCATCAGTACTCGATAGAGGCTAGCTCTGCTATTTATGATAAGGTGTGGCGATTTGACCACGAGGCTCTTCCTCGGGATCTGATCAGCCGTGGAATG GCTGTAGAGGATCCAACTGCTCCACACGGTCTGAAACTAACAATCGAAGACTACCCTTATGCCAACGATGGTCTGCTGATATGGGATTCTATCAAACAAT GGGTGACAGACTATGTTAATCAGTACTATCCCGACAAAAATCTCATAGCCTCGGATACAGAGCTTCAAGCTTGGTGGAATGAGGTTCGTTACGAGGGGCA TGCAGACAAAAAGGATGAGCCATGGTGGCCAAGTCTGAAAACTGCTGAAGACCTTGTTCAGATTTGCACTACTATCATATGGGTAGCATCCGGTCACCAC GCAGCTGTGAACTTTGGGCAGTATGCATACGCCGGATTCTTCCCAAACCAACCTACCATAAGCAGGCTGAAAATGCCTGATGAGGACCCCACAGAAGAGG AATGGAAGTTGTTCATGCGGAAACCAGAGACTGTGCTTCTGACAACGTTTCCTTCGCAGATACAAGCTGCGAAGGTCATGGCTGTTCTAGATGTGCTGTC GAGTCATGCACCTGATGAAGAGTATCTCGGGGAGAAAATCGAGCCGGCTTGGGCTGATGAGCCCCAAATCAAGGCAGCTTTTGAGAAATTGAATGGCAGG ATGAAGGAGGTTGAGGGAGAAATCGATTCCAGGAATGCAGATGCTTCTAGGAGGAACAGGAATGGAGCTGGTATCTATCCTTATGAGCTTCTGAAGCCTT TCTCAGAAGGTGGAGTTACTGGAAAGGGCATCCCTTACAGCATCTCCATTTAA
AA sequence Show only first row Show all	>Lus10027379 pacid=23145457 polypeptide=Lus10027379 locus=Lus10027379.g ID=Lus10027379.BGIv1.0 annot-version=v1.0 MILELIPADLDSNGKEKSTVSSFAHFAGVNGSEIRYEASFGLPSDFGTVGAMRVENLHIREMFLKDIAISGFPNGTVNIECESWVPPKLSGKPKRIFFTT KSYLPSDTPTGLKKLRSDELVVLRGSGQGERKKGDRIYDYDVYNDLGSPDLSAGLKRPVLGGKEHPYPRRCRSGRQRSTKDPESESRGIYFYVPRDEEFS EIKTAQFGAKTLYSVLHALVPTLETILIDKDLGFPHFTAINEMFDQGLNLPPYSQATLVSLLPTLIRNSAEASNDVLQFEVPPTMDRNSFFWFTDEEFAR QTLAGVNPCTLQLITEWPIKGNLDPSVYGPQESGITKELIEREIKGYTTLEENFTNLTVPLGTPMDGRPQWKKVYVPNFSSATDVWLWRLAKAHVLSHDS AYHQLISHWLRTHCCTEPYIIAAKRQLSAMHPIHRLLSPHFRYTMEINALARQALINAGGVIESTFSPHQYSIEASSAIYDKVWRFDHEALPRDLISRGM AVEDPTAPHGLKLTIEDYPYANDGLLIWDSIKQWVTDYVNQYYPDKNLIASDTELQAWWNEVRYEGHADKKDEPWWPSLKTAEDLVQICTTIIWVASGHH AAVNFGQYAYAGFFPNQPTISRLKMPDEDPTEEEWKLFMRKPETVLLTTFPSQIQAAKVMAVLDVLSSHAPDEEYLGEKIEPAWADEPQIKAAFEKLNGR MKEVEGEIDSRNADASRRNRNGAGIYPYELLKPFSEGGVTGKGIPYSISI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72520		ATLOX4, LOX4	Arabidopsis thaliana lipoxygen...		Lus10027379 [exp]	0	1
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Lus10019546 [exp]	1.7	0.7318
AT1G27340			Galactose oxidase/kelch repeat...		Lus10015775 [exp]	7.7	0.6126
AT5G67090			Subtilisin-like serine endopep...		Lus10001130 [exp]	11.4	0.6855
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10011476 [exp]	13.3	0.6800
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040263 [exp]	15.3	0.6498
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Lus10028230 [exp]	30.8	0.6036
AT5G04970			Plant invertase/pectin methyle...		Lus10028882 [exp]	32.1	0.6278
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10004697 [exp]	34.3	0.6181
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040264 [exp]	34.6	0.6630
					Lus10040877 [exp]	41.4	0.5328

Compare expression of checked genes

Lus10027379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.