Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04390 219 / 9e-60 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002545 [exp] 797 / 0 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002546 [exp] 300 / 2e-95 AT1G04390 233 / 3e-71 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G457550 [exp] 667 / 0 AT1G04390 432 / 6e-137 BTB/POZ domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027380 pacid=23145467 polypeptide=Lus10027380 locus=Lus10027380.g ID=Lus10027380.BGIv1.0 annot-version=v1.0 ATGAAATCTTCCAAGCAACCGGCGATTGGGGACACCACAGGCAGATTCGCCCGTGTTCAGACACTCCACCGGCGTCTCCACAGCGCTCTCAGCCTCGGCA CTAGATTTCACGACGGAGAAGGTTGGAAATGGAAGTCTACTGATATTGAGATACAGAGGCATGTGCTTCGCTCGATATCTTCCTTCCTTGATAGCATCAC GCCAGATTTTTCCCGCAATGCTCTAGTTAGGGACTCGGTTGCTGATATTGTTAGAGTGTTAGTGTGGATTCTCCAGTATAAAAGTCAAGCTGCAGTAAGC ATCGCTGCAAGTGTAGTAATAAAGTTAATGAACACAATCCCCAATGAGATTCTGAGGCCTTATTTGTTAGAAATGGTACTTCCTTTATCATCTTTGTTGT CTGGCTATTCCTTACAAGTGTCCACTTCATCCGCTCATGCCCTGAGTATGATCTTCTCTGGTTTGAATGTGAAAGGAGACCACAATAAGGTCTGGGAGAT GCTGACTGAGTCCAACTCTGTCCATCTCATTCTTAGTAATATGTCATCAGTTATTTCTGGTGCTGATGCTGAGACGATGGAGAATTTTTTGGAGATGATA TCACTCTTGACTATAATACTACATTGGTGTCCCCCAACTCGATACTATGTTTGGAGCAATATGGGATTTATGCATGTATTGGGAATTATGAGCTTGAGGC CTGATTTTTCTGTTCAGACCGCAGTTCTGAAGTTGTATGTTGGAATAGCTATGTGCGGCAATGGTGCCAAAAAGCTTCTACAGAATGGACAACTCTTAGG AATGATGGTTTCCTGCATGGGAAAGTCATATCCTCCTTCTGTGCGGGTAGAGGGGTTTAGACTCGCAAACTGTTTGGCGACAAACGAAGAGGGATGTTTA AGAATGATGAGCTTGTTTTGCGAGCCTATAGTAAAAGCGATAATTGACGGAATGAGTGTATTGGAATTTCCACCAAGAAAGGCAGATGATGATCAAATGT CTTTGCTGGTGGAAGCTTGTCAGCTAGCTCGCATAGTTTGTTCGGGTGGGGAGCATCACAACAATTTTTGGAAGCATGGGATCGATCACGTCCTTGTTCA TTTGCTTTCAAATGATTTCCATGATGAATTGCTTCAAGGTCCCTTGTCACTGGAGAAACTAATGCCCATTGCACGAGAGGCTCTTAAGCTCGATTTTCTT ATTGTTGTCAGGCCTTACATCTGGGAAATTCTTGGATGGCTTGCAGCACATTGTACGGAGGGTATCAACCATGACCTGTCTAGCCACGAATTTCACATTA ACATCCTCATAACTTGCGCATGTTTGTCTTTTGTGGAGTCGATTCAAAAAAGCTGCCAAATGTGTGTAAATGATATTGCTGACATATCCAAAGGTGGATC TGCGACGAGGGCAGTTCTGATGATGATATATTCTCCTTGCAAGTACTTTGAGTCAAAGGCAAAGCTAACACTGACTAAAATGTTGAAGCCTGGTGGAAAA GGTCATTTAAAACATTTATTGCGCTATATAAGTCTTGCGTCATCGAGGAACACATTTGGAACGCCTGATCTACTTGCTGTTGGTGTCAACTTGATGACTC TAACCTGTTATTCTGGCCTGCCACTGTATCAAACCCATATCGTTGAAAGTGGGGGAACCAAAATCTTGGTAGCTATTATATCATGGTGCATGAGACATAA GGTTCATGTCAAAGGGTTGGGTCTTGCTCAACATGATGTGCTATCTCAGAAAACATGTTGCTGGGAGGACAAAAAAGAGTGGGAAGGTGATGAAATGCTT CTATTGTGTGGCCTGTGGGGATTAACTGAGCTCGTGCTCTCTGGATGTGTTGTAAATCCTGACATGTTTGAACATGTGGATTACCTTGAAGATCAGTTTC TTAGTACTCTTCGGGAAATCTGTATGTCTTCTAGATCTCATGGGCTGAGGTGGTACAGCGCTTACATGCTTAGTTACTTTGGATTATATGGTTTTCCTTG TAAACTTGGGCAGCGTATTGGGAAAGCACTGCATGAAAATGAATATTCAGATATGCAAGTCATTTTAAGGAGCGGGCAGAGTGTGAGGGTCCATAGAGTA ATTCTTGCTATCAGGTGCCAATCATTGTTGCCTCCTCAAGCATCACCTTCCAGTGAAAAGTTGATTGGTAGTAATACTGCTATATCTGGCCAGCAGAAGC AGCAAGTTGTAGTGGGCTCGAGCTGTGATTATCTGAGGGCCATGTTTCAGTCTGGCATGCAAGAAAGTCACTCCAAGACCACAAAACTTCCTATTGGTTG GGAAGCCATGATCAAACTAGTGCATTGGTTTTACACTGATGAGCTGCCTAACCCTCCTATTGGATGTGCATGGCTCAATATGGGCGCAGAGGAAAAGCTG CAAGCTCTGCAACCATATGTAGAACTTTACTGGCTTTCTGATTTCTGGTTCTTGGAAACTGTCCAAGACGCATGCTATCAAGTCGTTCTATCTCGGATGG ACGCTGATGCAAAATTGTCTATCAAATTGCTGGATGTTGCTGCAAATTTGTCTCTCTGGAAACTAGCTGAAGTGGCTGCAGATCACCTAGCTCCTGCATA TCGTCAATTATGCCAGTCTGGCGATCTTGATTTGTTGGACGAAGATCTCGTTGACATGATTCGTGCTGCTTCAGTTAGGATCTCTAGAGACGGTCTTGAA GCTGTTTGA
AA sequence Show only first row Show all	>Lus10027380 pacid=23145467 polypeptide=Lus10027380 locus=Lus10027380.g ID=Lus10027380.BGIv1.0 annot-version=v1.0 MKSSKQPAIGDTTGRFARVQTLHRRLHSALSLGTRFHDGEGWKWKSTDIEIQRHVLRSISSFLDSITPDFSRNALVRDSVADIVRVLVWILQYKSQAAVS IAASVVIKLMNTIPNEILRPYLLEMVLPLSSLLSGYSLQVSTSSAHALSMIFSGLNVKGDHNKVWEMLTESNSVHLILSNMSSVISGADAETMENFLEMI SLLTIILHWCPPTRYYVWSNMGFMHVLGIMSLRPDFSVQTAVLKLYVGIAMCGNGAKKLLQNGQLLGMMVSCMGKSYPPSVRVEGFRLANCLATNEEGCL RMMSLFCEPIVKAIIDGMSVLEFPPRKADDDQMSLLVEACQLARIVCSGGEHHNNFWKHGIDHVLVHLLSNDFHDELLQGPLSLEKLMPIAREALKLDFL IVVRPYIWEILGWLAAHCTEGINHDLSSHEFHINILITCACLSFVESIQKSCQMCVNDIADISKGGSATRAVLMMIYSPCKYFESKAKLTLTKMLKPGGK GHLKHLLRYISLASSRNTFGTPDLLAVGVNLMTLTCYSGLPLYQTHIVESGGTKILVAIISWCMRHKVHVKGLGLAQHDVLSQKTCCWEDKKEWEGDEML LLCGLWGLTELVLSGCVVNPDMFEHVDYLEDQFLSTLREICMSSRSHGLRWYSAYMLSYFGLYGFPCKLGQRIGKALHENEYSDMQVILRSGQSVRVHRV ILAIRCQSLLPPQASPSSEKLIGSNTAISGQQKQQVVVGSSCDYLRAMFQSGMQESHSKTTKLPIGWEAMIKLVHWFYTDELPNPPIGCAWLNMGAEEKL QALQPYVELYWLSDFWFLETVQDACYQVVLSRMDADAKLSIKLLDVAANLSLWKLAEVAADHLAPAYRQLCQSGDLDLLDEDLVDMIRAASVRISRDGLE AV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04390			BTB/POZ domain-containing prot...		Lus10027380 [exp]	0	1
AT2G20790			clathrin adaptor complexes med...		Lus10034013 [exp]	2.0	0.8992
AT5G36930			Disease resistance protein (TI...		Lus10011741 [exp]	4.0	0.9006
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10011536 [exp]	6.3	0.8839
AT3G45830			unknown protein		Lus10018121 [exp]	8.5	0.8842
AT1G79190			ARM repeat superfamily protein...		Lus10016753 [exp]	9.2	0.8907
AT1G19290			Pentatricopeptide repeat (PPR)...		Lus10008185 [exp]	10.1	0.8535
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10003447 [exp]	10.5	0.8132
AT5G15270			RNA-binding KH domain-containi...		Lus10005232 [exp]	12.7	0.8770
AT5G06120			ARM repeat superfamily protein...		Lus10041603 [exp]	13.0	0.8798
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10027630 [exp]	13.0	0.8750

Compare expression of checked genes

Lus10027380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.