Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12930 281 / 3e-96 Lojap-related protein (.1) AT1G67620 49 / 5e-07 Lojap-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002544 [exp] 464 / 2e-168 AT3G12930 284 / 2e-97 Lojap-related protein (.1) Lus10015822 [exp] 41 / 0.0002 AT1G67620 168 / 2e-53 Lojap-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G142900 [exp] 314 / 2e-109 AT3G12930 321 / 6e-112 Lojap-related protein (.1) Potri.001G458600 [exp] 305 / 1e-105 AT3G12930 301 / 6e-104 Lojap-related protein (.1) Potri.008G105700 [exp] 52 / 3e-08 AT1G67620 184 / 1e-59 Lojap-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF02410 [flax] [poplar] RsfS Ribosomal silencing factor during starvation
Representative CDS sequence Show only first row Show all	>Lus10027381 pacid=23145346 polypeptide=Lus10027381 locus=Lus10027381.g ID=Lus10027381.BGIv1.0 annot-version=v1.0 ATGATAGCAGCAGGGCATCCCTCTCTGCCCATCGCCGGCGCCGGTGCTTGTACTCGTTACTCCAGCAAGCTTACGCCCGTCGAATCGAACTTCTTTAGAC GACTCGCTAAGCCTTCCAGGACGTTCTGCCATCAATTGGGTAGCCGAAAGCTCTGCTTCTTGCAAGGAAAGAGTTGCAATTTTAAGCCAATTTTTGCTCT TCAGAAAGACGCCTCTGACATCAACTTCTTAACGAATGCGGAAGACACCGACGAAGCGTTCGACGAATTGTTCAACAAGTATGGGAAAGTAGTGTTTAGA AGGAATGACCAAAAGCCTTTAATCGCAGAGGTTGACGATGATGCTGAAACCTTGTCATTTGCGGTGGAATTGGCCAAAGTTGCAAGTGATGTCAAAGCCG GAGACATCAAGGTTCTGTTTGTGAAGCCTCTGGTGTACTGGACTCGTTTTTTCATAATTGCCACAGCGTTTTCTCGTCCACAGACTGATGCAATTGGGTC GAGGATAAGAGATCTTGCTGAGAAGAAGTATGGAAAAGTTCCATCCGGAGACACAAAACCCAACTCATGGACCCTTTTGGACTTTGGTGATGTAGTGGTG CACATATTTCTTCCTCCGGAGAGAGATTTTTACAACTTAGAGGAGTTCTATGGCAATGCTATGCAAATTGATCTCCCTTTCGAGAACCAGTCTTCTGGAT TACACAAATGA
AA sequence Show only first row Show all	>Lus10027381 pacid=23145346 polypeptide=Lus10027381 locus=Lus10027381.g ID=Lus10027381.BGIv1.0 annot-version=v1.0 MIAAGHPSLPIAGAGACTRYSSKLTPVESNFFRRLAKPSRTFCHQLGSRKLCFLQGKSCNFKPIFALQKDASDINFLTNAEDTDEAFDELFNKYGKVVFR RNDQKPLIAEVDDDAETLSFAVELAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQTDAIGSRIRDLAEKKYGKVPSGDTKPNSWTLLDFGDVVV HIFLPPERDFYNLEEFYGNAMQIDLPFENQSSGLHK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12930			Lojap-related protein (.1)		Lus10027381 [exp]	0	1
AT3G17170		RFC3	REGULATOR OF FATTY-ACID COMPOS...		Lus10017084 [exp]	1.7	0.9154
AT3G59040			Tetratricopeptide repeat (TPR)...		Lus10027829 [exp]	10.2	0.8806
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10026888 [exp]	10.5	0.8955
AT1G77122			Uncharacterised protein family...		Lus10018923 [exp]	13.3	0.8200
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005030 [exp]	13.4	0.8860
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10004319 [exp]	21.9	0.8832
AT4G24090			unknown protein		Lus10017325 [exp]	22.2	0.8352
AT3G24590		PLSP1	plastidic type i signal peptid...		Lus10023651 [exp]	24.5	0.8503
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10035045 [exp]	27.9	0.8638
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Lus10042542 [exp]	29.8	0.8633

Compare expression of checked genes

Lus10027381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.