Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12940 492 / 2e-172 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19895 102 / 4e-23 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002543 [exp] 454 / 3e-157 AT3G12940 716 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10034201 [exp] 74 / 1e-13 AT3G19895 662 / 0.0 RING/U-box superfamily protein (.1) Lus10000199 [exp] 48 / 7e-06 AT3G19895 352 / 3e-119 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G143000 [exp] 597 / 0 AT3G12940 779 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G085700 [exp] 101 / 7e-23 AT3G19895 707 / 0.0 RING/U-box superfamily protein (.1) Potri.010G171100 [exp] 99 / 5e-22 AT3G19895 701 / 0.0 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027382 pacid=23145415 polypeptide=Lus10027382 locus=Lus10027382.g ID=Lus10027382.BGIv1.0 annot-version=v1.0 ATGGCGGCCAGTGGCCTGCCAGCATTAGGCCGCGTGAAGCTAAGTGATCTTTTAGCCACCGAAGGCCTTCCTTCGGATTCTTACAAGTTATCAGTGTCAA CTTTGTCACAGTCTCTTGCTCAGTATTCCGCTGCAATCATTCAGTTTTCAGCCACTGACGGTGCTCTCCTGAGGTCTGGGTTAGATTCTGCTCGTCTTTA CTTTCACCAAAGACCATTCCCCAGTGGAGAGGCGATTCAAGGCGACGATTGCGAGTGGTGCAGGACCTCGGGGTATTATGCTAATCCTCAGTTGGGGCAG GAAAAGTATGATTATAGACCAGGGCTCACTCCTACAGACCCTACCAACATCATGGAATTTCCTCCAGGAGGTTTGCCTGACATATTTTCTTTGCTGGCTA GAGCAGTTCGGGACATATTGGATGCAATAAGCTTCTTTTTAAATTTGCGTAGTTCTCCGTTTGCAGAAATACTTGATAATGTTCCCTTGAGGAGTCGAGA AATATCATCCTCAGTTCTGTCGGTTTGCTGTCATGCAAGGCCATCGTTTCAAGGAGCACTTGCACAACACCATAGTGCCCTCTACCAGGCAACCGCTGGT TATGTCAATCCTGCACTTCATAGAACGGAGATTAGTAGCATGGAGAGGAACATGTATGGACGTTGTTCTTTGTCATTTAAACTTATGCCGAAATCAATGA CCAATCTTACTTCTTCAGAGATGAGAGCAGCAGGTCATGGCATTGAATCCCAATTCCAGCTACCGATATCAGTGGATGATTTCATGCAGAGATCAAACTC AACTGATCACAACTTTAACAAGCATGGCTTTCAAAGTTTCAGCTTCCCCTTGACTCAAGACGGATCCACGAAGCCCATGACGAAGAGAAGGAGTAATTCA GGATGCAAACCCCTACCACCGTCAAAGAGGTTAAGGCTTGAAGCTCAAAGGGTCCTAAAGGAGAGAGTTCAGGACATTGCTGATAAGAAGGGCATAAAAC TTAGGTTCTGTAATTTGAAAGAGTGCGAGAGTCATGTCCATGCTGTGGATAGTCCTTGTGCCAATATCAGAATGGAGATTGGCTGGCCGCCTGGCGTGCC ATTTGTTCATCCTCACGACTTACCTAACAAGGCAAAGATTGCCTTTCTTGAAGCATACGAGCCTGGTTGGACAGCAAGTCAAGATTTTGATACTAGTATG ATGGAATCAGGACGAGGCAGAGCCCGGAACCAGTCTTTGTGTAGATCAATTCTGAATGTTGCATGGACCCTGAAGTTGGATTGGCGTTTTGACATAAGAG TACCGCCCGTGATCGATCCTCAGAAAGGCAATTTTGTGTTGTCAGGCTCTGATTAG
AA sequence Show only first row Show all	>Lus10027382 pacid=23145415 polypeptide=Lus10027382 locus=Lus10027382.g ID=Lus10027382.BGIv1.0 annot-version=v1.0 MAASGLPALGRVKLSDLLATEGLPSDSYKLSVSTLSQSLAQYSAAIIQFSATDGALLRSGLDSARLYFHQRPFPSGEAIQGDDCEWCRTSGYYANPQLGQ EKYDYRPGLTPTDPTNIMEFPPGGLPDIFSLLARAVRDILDAISFFLNLRSSPFAEILDNVPLRSREISSSVLSVCCHARPSFQGALAQHHSALYQATAG YVNPALHRTEISSMERNMYGRCSLSFKLMPKSMTNLTSSEMRAAGHGIESQFQLPISVDDFMQRSNSTDHNFNKHGFQSFSFPLTQDGSTKPMTKRRSNS GCKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCNLKECESHVHAVDSPCANIRMEIGWPPGVPFVHPHDLPNKAKIAFLEAYEPGWTASQDFDTSM MESGRGRARNQSLCRSILNVAWTLKLDWRFDIRVPPVIDPQKGNFVLSGSD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12940			2-oxoglutarate (2OG) and Fe(II...		Lus10027382 [exp]	0	1
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10033008 [exp]	2.0	0.8457
AT4G02680		EOL1	ETO1-like 1 (.1)		Lus10022084 [exp]	13.9	0.8039
AT5G04610			S-adenosyl-L-methionine-depend...		Lus10003963 [exp]	15.3	0.7890
AT2G47330			P-loop containing nucleoside t...		Lus10037527 [exp]	18.4	0.8161
AT5G04670			Enhancer of polycomb-like tran...		Lus10008985 [exp]	19.0	0.7998
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10039457 [exp]	19.1	0.8028
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10002285 [exp]	19.6	0.7919
AT4G24880			unknown protein		Lus10007295 [exp]	24.1	0.7866
AT3G08020			PHD finger family protein (.1)		Lus10016404 [exp]	29.7	0.7807
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10007468 [exp]	31.5	0.7813

Compare expression of checked genes

Lus10027382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.