Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16610 140 / 6e-37 RNPS1, SR45 arginine/serine-rich 45 (.1.2.3) AT1G79100 57 / 2e-10 arginine/serine-rich protein-related (.1) AT1G73530 51 / 2e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G27330 50 / 2e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G64200 50 / 2e-06 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT5G54580 47 / 4e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G51510 47 / 5e-06 Y14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G46020 45 / 5e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 45 / 2e-05 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT4G13860 43 / 2e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002542 [exp] 263 / 1e-83 AT1G16610 149 / 8e-41 arginine/serine-rich 45 (.1.2.3) Lus10031786 [exp] 175 / 3e-50 AT1G16610 207 / 7e-63 arginine/serine-rich 45 (.1.2.3) Lus10031212 [exp] 172 / 5e-49 AT1G16610 210 / 6e-64 arginine/serine-rich 45 (.1.2.3) Lus10003593 [exp] 53 / 2e-07 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10029426 [exp] 53 / 3e-07 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10014802 [exp] 52 / 5e-07 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032591 [exp] 46 / 8e-06 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10038932 [exp] 49 / 1e-05 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3) Lus10040854 [exp] 44 / 1e-05 AT3G46020 112 / 1e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G143100 [exp] 186 / 3e-54 AT1G16610 169 / 3e-48 arginine/serine-rich 45 (.1.2.3) Potri.012G038200 [exp] 52 / 1e-07 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 51 / 1e-07 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G208500 [exp] 50 / 2e-07 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G160300 [exp] 49 / 3e-07 AT2G27330 98 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G319900 [exp] 49 / 5e-07 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.011G130300 [exp] 49 / 7e-07 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G059000 [exp] 47 / 3e-06 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.002G095800 [exp] 47 / 7e-06 AT5G64200 204 / 5e-65 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.002G073450 [exp] 45 / 9e-06 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10027383 pacid=23145390 polypeptide=Lus10027383 locus=Lus10027383.g ID=Lus10027383.BGIv1.0 annot-version=v1.0 ATGGCGAAACCATCTCGAGGCCGCCGTTCGCCACCGTCTGGTTCAGCTTCTTCAAGGTCCAGGTCGCGTTCTCGCTCTTCCTCAGGTTCAGATTCCCAGT CCAGCTCCCGCTCGCGTTCCAGATCTCCGGTGCGTTCACGCTCGCTCTCTCGTTCCAGATCGTTGTCCTCTTCGTCACTTTCTCGCAGTCCAAGCTCCGG TAGCCGCAGTCCTCGTCCTCAACGAAAGAAGAGCCCTGCTGCTGAAGTAGCTAGGCGAGGTCGCAGTCCACCGCCACAAGTGAAAAGGACATCTCCGCCA CTGAGTCGTTTCCAACTGTTGTTCCCCTCCCAAAGGCAAGTTCTTGCGCATTACTCACCTGTCAGCCACAGGAAACACCACTTCCCGTCTCACTTGCATG TGCTGAGCATACCTCCAGGGTTCATCCTCCTGAGCCAGGACCGAACTCTCCATGAGATTCTTAGTTGCATTACTTATAGCTTCCTTGTTGGTAACTATGG TGAAGTTGTGCATGTTAATTTGGCAATGGACCGCACTGTTAATCTTCCAAAAGGATTTGGGTACATTGAGTTCAAGGTCAGAGCAGATGCTGAGAAGGCT CTTTCATACATGGATGGGGCTCAAATTGATGGTAATGTTGTGCGGGTTCGGTTTACATTACCCCCACGGCAGAAATTTTCTCCGCCTGCTAAGCCTTTAG CCACTAAACGAGATATTACAAAAACTGATGGTGCCAATACCGAAGTTGAGAAGGATGGACCAAAACGTCAAAGGGAAGCCTCTCCTCGAAGAAGATCTCC CATTACCCGGAGAGGTGGATATCCCATTACTAGGAGAGGGGGGTCTCCTAGACGGCCACCAGATTCTCCTCCACGGAGGCGTGTTGATTCTCCTGGTCGT CGCCGTGTGGAGTCACCTTTTCGTCGAGGGGAAACTTCTCCAAGGCATAGACAAGCATCCCCGGGCAGGGGTCATTCTTCATCTCCTCCACCAAGAAGAT TCAGATCACCTCAAAGGACCTCTCCACGAAGAGTAAGAGGCAGTCCTGTTCAGAGGCGATCTCCTCTACCTTTAAGAAGGCGCTCACCTCCTAGACGAGC CCGATCTCCTCCAAGAAGGTCTCCACTGCGTAGGCGTAGCCGCTCTCCAATTCGCCGGCCTTTGCGCTCGCGGTCCAGATCACCTTCCCCAAGGAGAGGC CGAGGACCACCGGCAAGACGTGGGAGATCATCATCTTACTCTGACTCGCCTAGCCCACGCAAGGTGCCTCGAAAGATCTCTAGGAGCCGCAGTCCTAAAA GGCCGTTGAGAGGAAGAAGTAGCAGTAACAGCAGCAGCAGCAGATCGCCCCCTCGAAAGCCATAA
AA sequence Show only first row Show all	>Lus10027383 pacid=23145390 polypeptide=Lus10027383 locus=Lus10027383.g ID=Lus10027383.BGIv1.0 annot-version=v1.0 MAKPSRGRRSPPSGSASSRSRSRSRSSSGSDSQSSSRSRSRSPVRSRSLSRSRSLSSSSLSRSPSSGSRSPRPQRKKSPAAEVARRGRSPPPQVKRTSPP LSRFQLLFPSQRQVLAHYSPVSHRKHHFPSHLHVLSIPPGFILLSQDRTLHEILSCITYSFLVGNYGEVVHVNLAMDRTVNLPKGFGYIEFKVRADAEKA LSYMDGAQIDGNVVRVRFTLPPRQKFSPPAKPLATKRDITKTDGANTEVEKDGPKRQREASPRRRSPITRRGGYPITRRGGSPRRPPDSPPRRRVDSPGR RRVESPFRRGETSPRHRQASPGRGHSSSPPPRRFRSPQRTSPRRVRGSPVQRRSPLPLRRRSPPRRARSPPRRSPLRRRSRSPIRRPLRSRSRSPSPRRG RGPPARRGRSSSYSDSPSPRKVPRKISRSRSPKRPLRGRSSSNSSSSRSPPRKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10027383 [exp]	0	1
AT3G28670			oxidoreductase, zinc-binding d...		Lus10042926 [exp]	5.9	0.7509
AT2G41830			Uncharacterized protein (.1)		Lus10019717 [exp]	7.2	0.7547
AT5G13480		FY	Transducin/WD40 repeat-like su...		Lus10026837 [exp]	20.6	0.7622
AT1G79020			Enhancer of polycomb-like tran...		Lus10033318 [exp]	23.4	0.7350
AT3G06330			RING/U-box superfamily protein...		Lus10038632 [exp]	23.7	0.7515
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10031683 [exp]	36.2	0.6788
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10005209 [exp]	37.5	0.7284
AT4G39680			SAP domain-containing protein ...		Lus10016433 [exp]	38.9	0.7196
AT3G09180			unknown protein		Lus10016953 [exp]	43.5	0.7240
AT1G20830		MCD1	multiple chloroplast division ...		Lus10030727 [exp]	46.5	0.7197

Compare expression of checked genes

Lus10027383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.