Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62220 597 / 0 ATGT18 glycosyltransferase 18 (.1) AT2G29040 337 / 1e-107 Exostosin family protein (.1) AT2G20370 326 / 1e-104 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT4G13990 319 / 5e-103 Exostosin family protein (.1) AT1G63450 319 / 2e-101 RHS8 root hair specific 8 (.1) AT5G41250 313 / 4e-100 Exostosin family protein (.1) AT2G32750 302 / 1e-96 Exostosin family protein (.1) AT1G68470 295 / 2e-94 Exostosin family protein (.1) AT2G31990 283 / 7e-90 Exostosin family protein (.1) AT2G32740 278 / 4e-88 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031685 [exp] 894 / 0 AT5G62220 622 / 0.0 glycosyltransferase 18 (.1) Lus10015022 [exp] 680 / 0 AT5G62220 624 / 0.0 glycosyltransferase 18 (.1) Lus10016532 [exp] 344 / 1e-112 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10001578 [exp] 342 / 5e-111 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10004967 [exp] 342 / 7e-111 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10024961 [exp] 323 / 2e-103 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10022862 [exp] 323 / 2e-103 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10006694 [exp] 318 / 4e-102 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10000604 [exp] 313 / 2e-100 AT1G63450 625 / 0.0 root hair specific 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G130700 [exp] 643 / 0 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.015G132600 [exp] 637 / 0 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.009G032500 [exp] 333 / 7e-107 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 324 / 3e-104 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.014G147800 [exp] 321 / 2e-103 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 317 / 4e-102 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.001G105300 [exp] 308 / 5e-98 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.001G382200 [exp] 288 / 2e-91 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.001G381900 [exp] 287 / 4e-91 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.001G120800 [exp] 253 / 2e-78 AT4G22580 593 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10027386 pacid=23144500 polypeptide=Lus10027386 locus=Lus10027386.g ID=Lus10027386.BGIv1.0 annot-version=v1.0 ATGCTCCCAATCGTCGATCCACCGCCGCCTGAGCCCGCCGACATCCGCAAAAAGCCCAAATTCGACGATAAAATCGGCCGGAAAAACTCCTTCAGCTCCC TCACCTCCCTCCTCAAACACGCCCACTTATCCCATCCTCGTTCATGGCTCCTCATCTCCGTCCTCTTCATCCAGATCCTCCTCCTCCTCACTCTCCGCTC CGTTCCTTTCCCTTTCACTTTCCTCCGCCATGTTGATTCTGATTCTTCCCCTTCCAGTTCCATTTCCAGTTCATCTTCCCCCCTTCCTGCTGCTGTTGTC TCTGCGCCACTCGTCAATTCAATCTCTGCCGCCTCCGCAACCACCGCCGCCGCCGCGGATTGTAAAAACGGGTACGTTTTCGTATACGATCTCCCGAGTA ATTTGAACTACGATCTAATTCACAACTGCGAGAAACTAAACCCGTGGAGCTCGCGGTGCGATGCGCTGGCGAACGACGGATTCGGCCAGCAAGCGAGTGC CGGAGTTTCCGGGATCGTGCCGGAAGAGTTGGCTCCGGCGTGGTACTGGACGGATCAGTTCGTCTCGGAGATCGTGTACCACAACAGGATGATGAAACAC AGATGCAGAACGACTGATCCAAGCAATGCGACGGCGTTTTACATCCCGTTTTACGCCGGATTGGCAGTGGGGAGATTCCTCTGGCAGAATTTCAGCCACC AGGATCGCGACCTCCACTGCGAGGAGATGCTAAGATGGATCCAGGATCAGGAGTATTTCAAAAGATCCGACGGATGGGATCATTTCCTTACCATGGGACG GATCACATGGGATTTCCGCCGCTCCGAAGAGAACGACTGGGGTTCGAGGTGCATTTACTTGCCGGGGATGAGAAACATCACGCGGCTGTTGATAGAGCGG AACCCGTGGGACTATTTCGACGTCGGTGTACCTTACCCTACAGGATTCCACCCCAGGTCCGACTCCGACGTCGTTTCGTGGCAGGAGTTCGTCCGCAGCC GCAACCGGTCGACGCTCTTCTCCTTCGCCGGAGCTTCACGAAAATCGTTCAAGAACGATTTCCGTGAAATCCTCATAAACCACTGCATCATCGAATCGGA CGCGTGCCGCATCGTCAACTGCGGTGGATCGAAATGCGCCAACGGATCCGCCGCCATCCTCCAGACATTTCTCGACTCCGATTTCTGTCTACAGCCGAGA GGGGACAGCTTCACCCGCCGATCGATTTTCGATTGCATGGTCGCCGGTTCGATCCCGGTCGTGTTCTGGCGGAGGACAGCGTATTACCAGTACGAGTGGT TCCTCCCCGGAGAACCGGGGAGCTACTCTGTTTTCATACACAGAAACAACGTGAAGAACGGGACGTCGATTCGGAAAGTGCTGGATGGGTACAGTAGAGA GGAGGTGAGGAAGATGAGGGAGAAGGTGATCGAGTACATTCCGAAGCTTGTGTATGCTAGGTCGAGCGATGGGTTGGAGACGATCAAGGATGCGTTCGAC GTCGCCATTGATGGAGTGTTGAGGAGGTTCGAAGAGCAGAAGGAGTTCGGGTATAAGTGGTAA
AA sequence Show only first row Show all	>Lus10027386 pacid=23144500 polypeptide=Lus10027386 locus=Lus10027386.g ID=Lus10027386.BGIv1.0 annot-version=v1.0 MLPIVDPPPPEPADIRKKPKFDDKIGRKNSFSSLTSLLKHAHLSHPRSWLLISVLFIQILLLLTLRSVPFPFTFLRHVDSDSSPSSSISSSSSPLPAAVV SAPLVNSISAASATTAAAADCKNGYVFVYDLPSNLNYDLIHNCEKLNPWSSRCDALANDGFGQQASAGVSGIVPEELAPAWYWTDQFVSEIVYHNRMMKH RCRTTDPSNATAFYIPFYAGLAVGRFLWQNFSHQDRDLHCEEMLRWIQDQEYFKRSDGWDHFLTMGRITWDFRRSEENDWGSRCIYLPGMRNITRLLIER NPWDYFDVGVPYPTGFHPRSDSDVVSWQEFVRSRNRSTLFSFAGASRKSFKNDFREILINHCIIESDACRIVNCGGSKCANGSAAILQTFLDSDFCLQPR GDSFTRRSIFDCMVAGSIPVVFWRRTAYYQYEWFLPGEPGSYSVFIHRNNVKNGTSIRKVLDGYSREEVRKMREKVIEYIPKLVYARSSDGLETIKDAFD VAIDGVLRRFEEQKEFGYKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10027386 [exp]	0	1
AT3G11320			Nucleotide-sugar transporter f...		Lus10014832 [exp]	2.0	0.8741
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10005772 [exp]	2.8	0.8554
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Lus10002036 [exp]	6.0	0.8533
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10003978 [exp]	6.5	0.8465
AT5G40150			Peroxidase superfamily protein...		Lus10039445 [exp]	8.1	0.8713
AT3G02645			Plant protein of unknown funct...		Lus10009504 [exp]	9.5	0.8423
AT3G49720			unknown protein		Lus10019279 [exp]	10.0	0.8651
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10040821 [exp]	12.0	0.8496
AT2G25760			Protein kinase family protein ...		Lus10005479 [exp]	12.4	0.8441
					Lus10023559 [exp]	14.1	0.8779

Compare expression of checked genes

Lus10027386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.