Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62200 222 / 3e-74 Embryo-specific protein 3, (ATS3) (.1) AT2G41475 176 / 2e-56 Embryo-specific protein 3, (ATS3) (.1) AT5G62210 135 / 7e-40 Embryo-specific protein 3, (ATS3) (.1) AT5G07190 116 / 1e-32 ATS3 seed gene 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031684 [exp] 345 / 5e-123 AT5G62200 223 / 5e-75 Embryo-specific protein 3, (ATS3) (.1) Lus10019416 [exp] 154 / 8e-48 AT2G41475 179 / 7e-58 Embryo-specific protein 3, (ATS3) (.1) Lus10043273 [exp] 0 / 1 AT2G41475 107 / 7e-32 Embryo-specific protein 3, (ATS3) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G132700 [exp] 236 / 3e-80 AT5G62200 204 / 1e-67 Embryo-specific protein 3, (ATS3) (.1) Potri.001G193500 [exp] 189 / 1e-61 AT5G62200 184 / 1e-59 Embryo-specific protein 3, (ATS3) (.1) Potri.006G069800 [exp] 184 / 4e-59 AT2G41475 194 / 1e-63 Embryo-specific protein 3, (ATS3) (.1) Potri.018G131800 [exp] 182 / 7e-59 AT2G41475 197 / 5e-65 Embryo-specific protein 3, (ATS3) (.1) Potri.012G130800 [exp] 169 / 4e-54 AT5G62200 150 / 6e-47 Embryo-specific protein 3, (ATS3) (.1) Potri.015G132900 [exp] 161 / 3e-50 AT5G62200 153 / 4e-47 Embryo-specific protein 3, (ATS3) (.1) Potri.012G130900 [exp] 158 / 5e-49 AT5G62200 154 / 1e-47 Embryo-specific protein 3, (ATS3) (.1) Potri.010G214400 [exp] 96 / 4e-25 AT5G62200 93 / 7e-24 Embryo-specific protein 3, (ATS3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0321 [flax] [poplar] PLAT PF06232 [flax] [poplar] ATS3 Embryo-specific protein 3, (ATS3)
Representative CDS sequence Show only first row Show all	>Lus10027387 pacid=23144605 polypeptide=Lus10027387 locus=Lus10027387.g ID=Lus10027387.BGIv1.0 annot-version=v1.0 ATGGAGAAGAAAATGGCCACGGCTCCGTATTCTCGCTTGCTTATCTTCTCCGTCTTCGTCCTCTCCGTCTCCTTCTGTTCAGCGGCTGATTCCGTCCCAA CACTGCAGCCTCACGCTCTCGACTCCTTCAACCTCAGTTTGATTCAGGAGGTAGCGAATAGCTGTTCTTACACGGTGGACATAAGCACGAGCTGTTCGTC TTCCGTGTACACTCGCGATCAAATCAGTATCGCCTTCGGGGACGCCTATGGAAACCAGATTTACGCGCCAAGGATCGACGATCCAGCCACGAGAACATTC GAGCGATGCTCCTCCGACACATTCCAGATAAACGGGCCGTGTGCATACCAGATATGCTACGTGTACCTATACAGGAGCGGACCCGATGGCTGGAAGCCAG GGAGCGTGAGGATCTACGGCTACAATTCTCGGGCTGCCACGTTCAACTACAACACCTTCGTTCCGGGGGATCTCTGGTACGGGTTCAACTACTGCGGCAA CGCAGGCTCCGGGAGTAGCAAGCGGGTTCCCGGATGGTTCGTCTCTGTGATTCTCTGGGTTCTTGCTAGTGCTATGCTGTGA
AA sequence Show only first row Show all	>Lus10027387 pacid=23144605 polypeptide=Lus10027387 locus=Lus10027387.g ID=Lus10027387.BGIv1.0 annot-version=v1.0 MEKKMATAPYSRLLIFSVFVLSVSFCSAADSVPTLQPHALDSFNLSLIQEVANSCSYTVDISTSCSSSVYTRDQISIAFGDAYGNQIYAPRIDDPATRTF ERCSSDTFQINGPCAYQICYVYLYRSGPDGWKPGSVRIYGYNSRAATFNYNTFVPGDLWYGFNYCGNAGSGSSKRVPGWFVSVILWVLASAML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62200			Embryo-specific protein 3, (AT...		Lus10027387 [exp]	0	1
AT3G05010			Protein of unknown function, t...		Lus10018985 [exp]	3.2	0.8839
AT1G04290			Thioesterase superfamily prote...		Lus10019228 [exp]	3.2	0.8767
AT3G09830			Protein kinase superfamily pro...		Lus10026524 [exp]	3.5	0.8780
AT1G61670			Lung seven transmembrane recep...		Lus10025219 [exp]	3.5	0.8739
AT5G58920			unknown protein		Lus10040699 [exp]	3.7	0.8725
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10019447 [exp]	3.9	0.8783
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Lus10022626 [exp]	6.8	0.8810
AT4G39235			unknown protein		Lus10021065 [exp]	7.7	0.8602
AT5G22875			unknown protein		Lus10037369 [exp]	10.5	0.8430
AT5G52810			NAD(P)-binding Rossmann-fold s...		Lus10039290 [exp]	10.6	0.8335

Compare expression of checked genes

Lus10027387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.