Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62190 802 / 0 PRH75 DEAD box RNA helicase (PRH75) (.1) AT5G26742 335 / 1e-104 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT3G22330 311 / 9e-97 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT3G22310 310 / 3e-96 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT1G55150 237 / 4e-70 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 234 / 5e-68 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G31970 229 / 1e-66 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 230 / 3e-66 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 230 / 4e-66 DEAD box RNA helicase family protein (.1.2) AT3G06480 225 / 4e-62 DEAD box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031683 [exp] 1072 / 0 AT5G62190 748 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10015020 [exp] 974 / 0 AT5G62190 778 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10038898 [exp] 963 / 0 AT5G62190 768 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10001057 [exp] 352 / 6e-111 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10001425 [exp] 325 / 7e-101 AT5G26742 859 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10027268 [exp] 301 / 2e-92 AT3G22330 632 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10031012 [exp] 299 / 2e-92 AT3G22330 690 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10038975 [exp] 299 / 1e-91 AT3G22330 639 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10035410 [exp] 295 / 2e-90 AT3G22330 692 / 0.0 putative mitochondrial RNA helicase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G131000 [exp] 910 / 0 AT5G62190 794 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.015G133400 [exp] 903 / 0 AT5G62190 785 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.005G000500 [exp] 348 / 3e-109 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.005G000100 [exp] 347 / 9e-109 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.006G024100 [exp] 300 / 1e-92 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.016G023100 [exp] 290 / 1e-88 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.001G347100 [exp] 231 / 2e-65 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.015G083000 [exp] 227 / 3e-65 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G071400 [exp] 229 / 7e-65 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.003G038300 [exp] 221 / 3e-64 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0221 [flax] [poplar] RRM PF08152 [flax] [poplar] GUCT GUCT (NUC152) domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10027388 pacid=23144512 polypeptide=Lus10027388 locus=Lus10027388.g ID=Lus10027388.BGIv1.0 annot-version=v1.0 ATGCCGTCGATTACTCCGGCGAACAATTCAGCGGAGTACGTCGACAAAAAGGTGAAGAAAATGAAGAAAACCGCTCTCGAATGGCTGGAGTCGGAGACTC CAGCGCCGAAGAGCAAGAAGAAGAAGAGTTCGAAGGTCTCTGATCAGGAGGAGGAAGAACCGAAATCGGAGAAGAAGACGAAGAAGGATAAGAAGAAAAA GAGGAAAGCTGACGAAATTGAAAATGGAGATGATGATAGGAGCCGGACGAGCTCGGAGCTCGGCGATGAGGCGGCAAAGGAGAAGAAGAAGAGCAAGAAG GTTAAGAAGGCGAAGGAAGAAGAAGTGGAGGAAGCTAAAGCTGTAGATCCTAACGCTGTGACGAACTTCCGAATTTCCGAGCCGTTGAGGCAGAAGCTCA AGTCTAGAGGGATAGAGGCGTTGTTTCCTATTCAGGCGATGACGTTCAATGACGTCCTCAACGGGTGTGATTTGGTCGGAAGAGCTCGTACTGGTCAGGG GAAAACACTTGCTTTTGTATTGCCGATATTGGAATCTCTAACCAACGGACCTACGAAAGCCGCCAGGAAAATGGGGTATGGAAGGCCACCGAGCGTTCTT GTTCTTCTACCGACTAGGGAGTTGGCAAGCCAGGTGCATGAGGACTTCAAGGTCTATGGCGAGTCATTGGGCTTGACGTCTTGCTGTTTATATGGTGGTG CTCCTTACAACCCTCAAGAGTCGGCTTTGAAGCGAGGGGTGGATATAGTTGTGGGAACACCTGGACGCATTAAGGATCACATTGAGCGGGGGAATATTAA TTTTAGCTCCTTGGTGTTCCGGGTTCTCGACGAGGCTGATGAGATGCTCCGGATGGGTTTTGTCGAAGATGTGGAGCTTATTCTTGGGAAAGTGGAGGAT GTCACGAAGGTCCAGACTCTTCTGTTCAGTGCTACTTTGCCTTCTTGGGTGAAACAGATTTCTTCAAGGTTCCTCAAACAGTCGAAGAAAACCATTGATC TTGTTGGTAATGAGAAAATGAAGGCCAGTATCAACGTTAGACACATTGTGCTTCCTTGTACTCCCTCAGCTATACCTCAGCTTATTCCTGATGTCATTCA CTGTTATAGCAGCGGAGGTCGCACCATCATATTCACTGAGAAAAAGGAAACTGCTAATCAACTTGCTGGGTTGTTGCCCGGGGCACGTCCTTTACATGGC GATATACAACAATCTCAGCGTGAGGTGACACTTTCTGGGTTTAAGTCTGGCAAGTTCATGACCTTGGTTGCCACAAATGTAGCTGCACGAGGATTGGATA TCAACGACGTGCAATTGATTATCCAGTGTGAACCTCCTCGTGATGTTGAAGCTTATATTCATCGATCTGGACGCACAGGAAGAGCAGGAAATACTGGGGT TGCCGTGATGCTCTTTGATCCAAGAAGGTCCAATATCTCCAAGATAGAAAGAGAATCTGGAGTGAAGTTTGAACACGTAGCTGCACCTCAGGCTGCTGAT ATTGCCCAATCAGTTGGTGTACAGGCAGCCGAATCTATAAACAAAGTTTCCGACAGTGTGATCCCTGCTTTTAAGTCTACAGCAGAAGACATGTTGAGTT GTTCCGGTTTATCAGCTGTCGATCTCCTCGCAAAAGCACTAGCCAACGCTTCCGGTTATACAGAGATAAAGACGAGGTCAATCCTAACGTCCATGGAGAA TCATGTGACTCTACTTCTTGATGCTGGAAAACCGTTCTACTCTCACTCATATGCTTACAGCATCATGAAGAAATTTCTGCCGGAGGATAAGGTCGAGTCA GTGAAGGGCATAACGCTTACAGCCGACGGGAAAGGTGCCGTCTTTGATGTCGCGAGTGCAGATGTCGACACTTTCCTCGCTGGTGCGAGAAGGGCGGGTT ACGTGAGCATAGAAGTGGTGAAAACCTTGCCTGCTCTCCAAGAAAGAGACCAGTCAAGAGGGAGATTCGGCGTTGGTGGAGGTGGTGGCCGTGGGTACGG TGGAGATAGGAGTAGTGGAGTTGGCTATAGATTTGGCAGGGGCGGGAGAAGTGGCTTCGGTGGTGGTAGGGGTGGCTCCGGTGGTTGGAGAGGGAACAAG TGGTGA
AA sequence Show only first row Show all	>Lus10027388 pacid=23144512 polypeptide=Lus10027388 locus=Lus10027388.g ID=Lus10027388.BGIv1.0 annot-version=v1.0 MPSITPANNSAEYVDKKVKKMKKTALEWLESETPAPKSKKKKSSKVSDQEEEEPKSEKKTKKDKKKKRKADEIENGDDDRSRTSSELGDEAAKEKKKSKK VKKAKEEEVEEAKAVDPNAVTNFRISEPLRQKLKSRGIEALFPIQAMTFNDVLNGCDLVGRARTGQGKTLAFVLPILESLTNGPTKAARKMGYGRPPSVL VLLPTRELASQVHEDFKVYGESLGLTSCCLYGGAPYNPQESALKRGVDIVVGTPGRIKDHIERGNINFSSLVFRVLDEADEMLRMGFVEDVELILGKVED VTKVQTLLFSATLPSWVKQISSRFLKQSKKTIDLVGNEKMKASINVRHIVLPCTPSAIPQLIPDVIHCYSSGGRTIIFTEKKETANQLAGLLPGARPLHG DIQQSQREVTLSGFKSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFDPRRSNISKIERESGVKFEHVAAPQAAD IAQSVGVQAAESINKVSDSVIPAFKSTAEDMLSCSGLSAVDLLAKALANASGYTEIKTRSILTSMENHVTLLLDAGKPFYSHSYAYSIMKKFLPEDKVES VKGITLTADGKGAVFDVASADVDTFLAGARRAGYVSIEVVKTLPALQERDQSRGRFGVGGGGGRGYGGDRSSGVGYRFGRGGRSGFGGGRGGSGGWRGNK W

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10027388 [exp]	0	1
AT3G45770			Polyketide synthase, enoylredu...		Lus10020160 [exp]	3.3	0.8916
AT3G21400			unknown protein		Lus10037507 [exp]	6.0	0.8707
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042246 [exp]	8.5	0.8854
					Lus10007580 [exp]	11.5	0.8721
AT1G51160			SNARE-like superfamily protein...		Lus10027541 [exp]	19.4	0.8661
AT5G58760		DDB2	damaged DNA binding 2 (.1)		Lus10038314 [exp]	24.8	0.8208
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10011412 [exp]	30.6	0.8682
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10006469 [exp]	33.9	0.8624
AT2G15000			unknown protein		Lus10020971 [exp]	34.0	0.8301
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10022444 [exp]	36.7	0.8366

Compare expression of checked genes

Lus10027388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.