Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66520 394 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 362 / 2e-119 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G42920 360 / 1e-118 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G48910 358 / 6e-117 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G56310 352 / 7e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 352 / 7e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 346 / 6e-112 SLO1 SLOW GROWTH 1 (.1) AT2G20540 340 / 4e-111 MEF21 mitochondrial editing factor 21 (.1) AT4G37380 337 / 6e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 339 / 2e-108 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014298 [exp] 389 / 4e-129 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 380 / 1e-125 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 370 / 2e-121 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 369 / 2e-121 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010909 [exp] 367 / 3e-120 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 367 / 3e-119 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 366 / 6e-119 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007341 [exp] 344 / 1e-112 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030053 [exp] 347 / 1e-111 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G012600 [exp] 383 / 3e-126 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 378 / 6e-125 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G175900 [exp] 368 / 2e-122 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 374 / 6e-122 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G202600 [exp] 365 / 4e-121 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.017G141200 [exp] 360 / 4e-119 AT5G66520 407 / 1e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 361 / 2e-118 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 361 / 3e-117 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G237000 [exp] 356 / 2e-116 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G223900 [exp] 353 / 5e-116 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027389 pacid=23144601 polypeptide=Lus10027389 locus=Lus10027389.g ID=Lus10027389.BGIv1.0 annot-version=v1.0 ATGCTTGAAACGGATTCCGATTTCCTCATCTCACGTCTTCTCTTCTTCGTCGCGATCCCGGAATCCGGCTGTCTCAACTACGGGAGACGGATCTTCGACT CTATCAGCAGCCCGAATCTCCCGCTCTACAACATCATGATCAGAGCTTACGCCTCTTCTGAGAAATCGGAGCGAGATAACAATCATTATTCAGCTCTGGC ATTGTACAGGGAAATGATGCTTGATGGAGTTCGACCGAATGCGCTCACGTTTCCGTTTCTGTTGAAGGATTGCGGTAAGAGGCTCGAACTTGCTTCTGGC TGCTGTGTTTATGGAACCTCGATTAAATGTGGCCTGGATGATGATATCTTTGTTGGAAACTCTATGATCAGTTTGTACAGTTTATGCGGGGTTGTGAGTA GTGCACGGAAGGTGTTCGACAAAATGTCTCAAAGAGATGTTGTGTCGTGGAACTCGATGATTATTGGGTTCTTGAGAAACGGGAATCTCGAGGAAGCGTT GGAATTGTTTGAGCGAGTGAGTAGTGGTAGGAATGGTAGGAATATCATAACGTGGAACTCGATGATTACCGGATTTGTTCAGGGTGGGCAGGCGAAGAAG GCTTTGGACATGTTCCATGAAATGCAGTGCGGGAGTGATTCAGTCAGACCTGATAAGGTAACCATCGCTAGTGTGCTATCGGCCTGTACTTATCTTGGAG CAATCGATCATGGCAAGTGGATACATAGTTACTTGAAGAGAAGCCGGTTGGAATTTGATACAGTGCTCGCGACTGCTTTAGTCGACATGTATGGAAAATG TGGCGATCTGGTTAAGGCTTATGAAGTCTTTAAGCAAATTCCAAAAAAGGACACACATGCATGGACAGCTATGATCTCAGCCTTTGCGCTGCACGGTTAT GTTGAAGAAGCTTTCGACTTGTTTGAACGAATGAAGTCGGACGGTGTTCGGCCTAACGTGATCACGTTCGTCGGATTGCTGTCCGCATGTGCACATTCCG GACAGGTAGAGAAAGGTCGTCAGTGTTTTGGCACAATGCAAAGTAAGTACCTGATCGAGCCGCGAGTTCATCACTATGCTTGTATGGTTGATATACTGGC AAAAGCTGGCCGGTTCGAGGAAGCTGAAGAGGTGATTAGAAGTATGCCGATGGCGCCTGATGTCTACGTTTGGGGTGCTTTGCTTGGAGGATGTTTAATG CAGGGGAATCTGGAGTTGGGCGAACAAGTTGCGAAGCGGTTGATAAGTTTGGAGCCGAGAAACCATGCTTTCTATGTCGCATTATGCGACGTGTATGGGA AAGGTGGGAAATTTGATGATGTGAAGAGAGTCAGAGAATTGATGAAGGGGATTGGGATAAGAAAGGAGGTTGCTGGTTGTAGTATGATTGAGGTTGAAGG AGTTGTTTACGAGTTCTCCGCCGGTGGTTCCCCTGATGTTATGATAGAGGTGGTGGCTGAAATCCTCAACAGGTTGAAGAATGAGATTAAAGATCACTTG CAGGGAGGGGTCTTTTAA
AA sequence Show only first row Show all	>Lus10027389 pacid=23144601 polypeptide=Lus10027389 locus=Lus10027389.g ID=Lus10027389.BGIv1.0 annot-version=v1.0 MLETDSDFLISRLLFFVAIPESGCLNYGRRIFDSISSPNLPLYNIMIRAYASSEKSERDNNHYSALALYREMMLDGVRPNALTFPFLLKDCGKRLELASG CCVYGTSIKCGLDDDIFVGNSMISLYSLCGVVSSARKVFDKMSQRDVVSWNSMIIGFLRNGNLEEALELFERVSSGRNGRNIITWNSMITGFVQGGQAKK ALDMFHEMQCGSDSVRPDKVTIASVLSACTYLGAIDHGKWIHSYLKRSRLEFDTVLATALVDMYGKCGDLVKAYEVFKQIPKKDTHAWTAMISAFALHGY VEEAFDLFERMKSDGVRPNVITFVGLLSACAHSGQVEKGRQCFGTMQSKYLIEPRVHHYACMVDILAKAGRFEEAEEVIRSMPMAPDVYVWGALLGGCLM QGNLELGEQVAKRLISLEPRNHAFYVALCDVYGKGGKFDDVKRVRELMKGIGIRKEVAGCSMIEVEGVVYEFSAGGSPDVMIEVVAEILNRLKNEIKDHL QGGVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10027389 [exp]	0	1
AT3G24715			Protein kinase superfamily pro...		Lus10038159 [exp]	3.3	0.8293
AT3G48770			DNA binding;ATP binding (.1)		Lus10004567 [exp]	11.6	0.8104
AT1G06230		GTE4	global transcription factor gr...		Lus10034067 [exp]	14.1	0.7882
AT5G43670			Sec23/Sec24 protein transport ...		Lus10008800 [exp]	17.1	0.8068
AT4G30020			PA-domain containing subtilase...		Lus10006973 [exp]	25.4	0.7762
AT3G24715			Protein kinase superfamily pro...		Lus10025941 [exp]	27.9	0.7769
AT4G23660		ATPPT1	polyprenyltransferase 1 (.1.2....		Lus10001531 [exp]	31.2	0.6498
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031862 [exp]	38.3	0.7533
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10009690 [exp]	43.4	0.7697
AT5G16720			Protein of unknown function, D...		Lus10004050 [exp]	45.4	0.7725

Compare expression of checked genes

Lus10027389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.