Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28100 460 / 1e-158 ATFUC1 alpha-L-fucosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031681 [exp] 842 / 0 AT2G28100 485 / 2e-168 alpha-L-fucosidase 1 (.1) Lus10021427 [exp] 450 / 1e-154 AT2G28100 671 / 0.0 alpha-L-fucosidase 1 (.1) Lus10016140 [exp] 437 / 2e-150 AT2G28100 644 / 0.0 alpha-L-fucosidase 1 (.1) Lus10027391 [exp] 176 / 1e-53 ND 44 / 4e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G131400 [exp] 697 / 0 AT2G28100 506 / 6e-177 alpha-L-fucosidase 1 (.1) Potri.015G133500 [exp] 691 / 0 AT2G28100 502 / 3e-175 alpha-L-fucosidase 1 (.1) Potri.009G006900 [exp] 437 / 2e-149 AT2G28100 704 / 0.0 alpha-L-fucosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01120 [flax] [poplar] Alpha_L_fucos Alpha-L-fucosidase
Representative CDS sequence Show only first row Show all	>Lus10027390 pacid=23144587 polypeptide=Lus10027390 locus=Lus10027390.g ID=Lus10027390.BGIv1.0 annot-version=v1.0 ATGGCTCTCAATAAGCCACACTTCTCATCAATCCTATCCTTATCATCCCTCTGGCTCTACCTCCTCCAAATCCTCATCACCGCCGTCGCGGCTGCCTCGA AATACAACGTGGAAACCCCGCCGCTGCCGGTTCTACCCTTGCCGTCCTTCTACCAGCTCAAATGGCAGCAAAGGGAAATCATCATGTTCTTCCACTTCGG AGTCAACACCTTCACTGGCATCGAACGGGGCAACGGCCACGAGTCCCCGTCCGTCTTCAACCCCACGGCGCTTAACGCCAGCCAGTGGGTCGACGCGGCC GCGGCCGCTGGAGTCTCGCTAGTGATTCTCACGGCCAAGCACCACGACGGGTTCTGCCTGTGGCCGTCCAAGTACACCGACCACTCCGTGGCGGCCAGCC CTTGGAAGGGTGGACGGGGTGACGTGGTTGGAGAACTTGTTGACGCCGCCGAAAAGCACGGCGTCGACGTCGGGTTTTATTTGTCGCCGTGGGATAGGCA CGATAGGAGGTACGGGAAGGAGGTGGAGTATAATGAGTATTACTTGGCGCAGTTACAGGAGCTTCTTACCAAGTACGGGAACATTAAGGAGATGTGGTTC GACGGGTTTAAAGGCCCAAACGCACCCAACATGTCGTACCACTTCTCGGACTGGTTCGCCATGGTGAAGGAGCTCCAGAGCCCCATCAACATATTCTCCG ACGCCGGGCTGGACGTCCGGTGGGTCGGGAACGAGGATGGGTTCGCCGGGGAAACTTGCTGGTCCACCATCAATCGGACGGCGCTGACCATCGGGAACAG GAGCATCGTTGACTACCTAAACAAAGGAGACCCCGAGGGAACAGACTGGTTACCGGCAGAGTGCGACGTCTCGATTCGACCAGGTTGGTTCTGGCACAAA TCTGATTCCCCGAAAAAGCTCAGCGAGCTCCTAGAGATCTACTACAACTCCGTCGGCCGCAACAGCCTACTCCTCCTCGGCGTTCCGCCAAACACCACGG GGCTCATTTCTGAGACCGACTTCAACAGACTACGAGAATTCAGAGCCGCGATCGACACCATCTTCTCGACCAACTTGGCTCAGCACCAAGGATGCTCGAC CCAGGCCAGCAGCGAAAGGGGAGGGAGGAGCGGAGCGTTTGGTGCTGATAACGTGTTGGACAACGACCATTTGTGGACGTATTGGGCCCCGAGTGGCCGA GAACAAAACAGGGAGTATTGGATTGAGATAAAGTGTGGTGGTGATGGGTTGAAGAAATTCAATGTGATTAGGATTCAGGAGGCGATTGGGTTAGGGCAAA GGGTTAAACGGCATGAGGTTTATGTGGATGGTGTTAGAGTTGCTCAAGGGACGACTATTGGGTACAAGAGGCTGCATAGGCTTGAGAAGGGAGTGGTACT TAGTGGGGAGAGTGTGAGGGTTAAAGTGTTGGAATCTAGGGCTGTGCCTTTGATTTCGTCGATTGGGATCTACTATGACCCGTATTGGCATTCTTAA
AA sequence Show only first row Show all	>Lus10027390 pacid=23144587 polypeptide=Lus10027390 locus=Lus10027390.g ID=Lus10027390.BGIv1.0 annot-version=v1.0 MALNKPHFSSILSLSSLWLYLLQILITAVAAASKYNVETPPLPVLPLPSFYQLKWQQREIIMFFHFGVNTFTGIERGNGHESPSVFNPTALNASQWVDAA AAAGVSLVILTAKHHDGFCLWPSKYTDHSVAASPWKGGRGDVVGELVDAAEKHGVDVGFYLSPWDRHDRRYGKEVEYNEYYLAQLQELLTKYGNIKEMWF DGFKGPNAPNMSYHFSDWFAMVKELQSPINIFSDAGLDVRWVGNEDGFAGETCWSTINRTALTIGNRSIVDYLNKGDPEGTDWLPAECDVSIRPGWFWHK SDSPKKLSELLEIYYNSVGRNSLLLLGVPPNTTGLISETDFNRLREFRAAIDTIFSTNLAQHQGCSTQASSERGGRSGAFGADNVLDNDHLWTYWAPSGR EQNREYWIEIKCGGDGLKKFNVIRIQEAIGLGQRVKRHEVYVDGVRVAQGTTIGYKRLHRLEKGVVLSGESVRVKVLESRAVPLISSIGIYYDPYWHS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10027390 [exp]	0	1
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040420 [exp]	3.6	0.8464
AT1G69800			Cystathionine beta-synthase (C...		Lus10013265 [exp]	5.5	0.8354
AT3G03150			unknown protein		Lus10008759 [exp]	6.5	0.7877
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10000431 [exp]	7.7	0.7738
AT2G21237			unknown protein		Lus10031077 [exp]	10.5	0.7791
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10032911 [exp]	11.5	0.7991
					Lus10042417 [exp]	13.0	0.7602
AT3G60460	MYB	DUO1	DUO POLLEN 1, myb-like HTH tra...		Lus10009780 [exp]	16.2	0.8092
AT3G42770			F-box/RNI-like/FBD-like domain...		Lus10021833 [exp]	18.2	0.7886
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028864 [exp]	20.2	0.7904

Compare expression of checked genes

Lus10027390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.