Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55830 193 / 3e-59 EPC1 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT5G04500 67 / 4e-12 glycosyltransferase family protein 47 (.1) AT1G80290 54 / 5e-08 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031680 [exp] 453 / 3e-161 AT3G55830 273 / 3e-90 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10040216 [exp] 208 / 5e-65 AT3G55830 471 / 5e-168 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10028274 [exp] 207 / 2e-64 AT3G55830 463 / 5e-165 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10037920 [exp] 76 / 5e-15 AT5G04500 1032 / 0.0 glycosyltransferase family protein 47 (.1) Lus10038646 [exp] 76 / 8e-15 AT5G04500 1009 / 0.0 glycosyltransferase family protein 47 (.1) Lus10020174 [exp] 59 / 1e-09 AT1G80290 391 / 1e-136 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191700 [exp] 203 / 4e-63 AT3G55830 439 / 1e-155 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G065800 [exp] 199 / 2e-61 AT3G55830 470 / 7e-168 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G232700 [exp] 77 / 4e-15 AT5G04500 987 / 0.0 glycosyltransferase family protein 47 (.1) Potri.008G028900 [exp] 75 / 1e-14 AT5G04500 992 / 0.0 glycosyltransferase family protein 47 (.1) Potri.006G278400 [exp] 59 / 2e-09 AT1G80290 352 / 2e-121 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF09258 [flax] [poplar] Glyco_transf_64 Glycosyl transferase family 64 domain
Representative CDS sequence Show only first row Show all	>Lus10027392 pacid=23144537 polypeptide=Lus10027392 locus=Lus10027392.g ID=Lus10027392.BGIv1.0 annot-version=v1.0 ATGTCAACCTTGATCGGTATCCATGACGACGTCGTCGACTCGCCGGCGAAGCAGAAGGCATCCAACTACACAAACCGATCAGCAATCCTCCTCCGCCGCA CTCCACACCTCCTCGCCGCCGCGAAATTCAAGCTCCTCCTCTTCCTCTCCCTGCTGTGCCTCGCGGTCTTCCTCACTTCTCGGCTCAGCTCCTTCGCCGG ATGGATCCCCGACGACAGTCCGCTTCCCTCGTACACCGTGCTGATCAACACCTGGAAGCGGAGTTCGCCGCTGAAGAAATCGACAGCTCACTACGCCTCG TGCGCCGGCGTGGATCGGATCCGCGTGGCTTGGGGCGAGACTGATCCGCCTTCGGAGAGGTTGAAGTCCGATCTGGACAGAATCGTGAAATCGAAGGGTT TGATTGGAGTTGAGATTGTGGAGAGTTATGGCGGGAGGTTTAAGCCGATCGATGGAGTTAGAACCGACGCGATTTTCTCGGTAGACGATGACGTGATCGT TGCTTGTTCGGATCTGGTGTTCGCTTTCTCCGTGTGGAGGACTGCTCCGAGGACGATGGTAGGGTTCGTTCCTCGCATGCATTGGCTCAATCTGGAGGTG CTGGTGAGCGATTCAATATCTCTATCCTCTGTTTCGTGCAATCCAATTGAATATGTTGAACAATTAGGTTTGAGTAACAGTAGTCACACTAGTTTAACTG ATTTGCTTGAGAATCCTGAATTGAAGAAGAAGAAGATATATGAAGAGAACTGTGAAGATATTGGAATGTCTATTGTCGTTGCCAATGCCTCTGGGACTCC TCCTCTTTGGGTCAAAGGGAAGATACAGGAAATCGGGTCATCGTGGGGGAGGGGTGACCGTAGAGGAGGGACCGAGAAGAGGAACGAATGCCTAAACGAC TTGATCTCGTTTTATGACAAGGTGCCTCTTCTCTCCACGAATGTGAAAGCGGTTAACGCCAAACAAGAGTGGTTGTGGTAG
AA sequence Show only first row Show all	>Lus10027392 pacid=23144537 polypeptide=Lus10027392 locus=Lus10027392.g ID=Lus10027392.BGIv1.0 annot-version=v1.0 MSTLIGIHDDVVDSPAKQKASNYTNRSAILLRRTPHLLAAAKFKLLLFLSLLCLAVFLTSRLSSFAGWIPDDSPLPSYTVLINTWKRSSPLKKSTAHYAS CAGVDRIRVAWGETDPPSERLKSDLDRIVKSKGLIGVEIVESYGGRFKPIDGVRTDAIFSVDDDVIVACSDLVFAFSVWRTAPRTMVGFVPRMHWLNLEV LVSDSISLSSVSCNPIEYVEQLGLSNSSHTSLTDLLENPELKKKKIYEENCEDIGMSIVVANASGTPPLWVKGKIQEIGSSWGRGDRRGGTEKRNECLND LISFYDKVPLLSTNVKAVNAKQEWLW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10027392 [exp]	0	1
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10040447 [exp]	2.8	0.8753
AT5G44060			unknown protein		Lus10011797 [exp]	4.2	0.8752
AT2G45260			Plant protein of unknown funct...		Lus10030291 [exp]	5.0	0.8826
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10031220 [exp]	5.5	0.8867
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Lus10010070 [exp]	6.9	0.8940
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10038356 [exp]	8.2	0.8862
AT1G05780			Vacuolar ATPase assembly integ...		Lus10033833 [exp]	8.5	0.8817
AT5G67540			Arabinanase/levansucrase/inver...		Lus10019280 [exp]	8.9	0.8892
AT5G12890			UDP-Glycosyltransferase superf...		Lus10031819 [exp]	12.0	0.8747
AT1G61740			Sulfite exporter TauE/SafE fam...		Lus10020068 [exp]	13.4	0.8752

Compare expression of checked genes

Lus10027392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.