Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25390 503 / 5e-171 Protein kinase superfamily protein (.1.2) AT5G51770 446 / 1e-148 Protein kinase superfamily protein (.1) AT2G45590 446 / 1e-148 Protein kinase superfamily protein (.1) AT1G80870 178 / 1e-47 Protein kinase superfamily protein (.1) AT3G58690 150 / 9e-40 Protein kinase superfamily protein (.1) AT5G15730 137 / 9e-35 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT3G24550 139 / 3e-34 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT5G11020 135 / 5e-34 Protein kinase superfamily protein (.1) AT1G06840 139 / 7e-34 Leucine-rich repeat protein kinase family protein (.1) AT1G49270 138 / 7e-34 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031679 [exp] 489 / 7e-171 AT4G25390 280 / 1e-91 Protein kinase superfamily protein (.1.2) Lus10041395 [exp] 470 / 6e-158 AT2G45590 647 / 0.0 Protein kinase superfamily protein (.1) Lus10031678 [exp] 455 / 4e-157 AT2G45590 263 / 6e-83 Protein kinase superfamily protein (.1) Lus10036533 [exp] 314 / 2e-99 AT2G45590 416 / 2e-138 Protein kinase superfamily protein (.1) Lus10026069 [exp] 162 / 8e-42 AT1G80870 646 / 0.0 Protein kinase superfamily protein (.1) Lus10033606 [exp] 147 / 2e-38 AT3G58690 606 / 0.0 Protein kinase superfamily protein (.1) Lus10021003 [exp] 145 / 3e-37 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041026 [exp] 144 / 3e-37 AT4G32000 480 / 4e-169 Protein kinase superfamily protein (.1.2) Lus10017647 [exp] 143 / 5e-37 AT3G58690 597 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G134100 [exp] 665 / 0 AT4G25390 536 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G131900 [exp] 639 / 0 AT4G25390 486 / 5e-164 Protein kinase superfamily protein (.1.2) Potri.014G072900 [exp] 486 / 3e-164 AT2G45590 576 / 0.0 Protein kinase superfamily protein (.1) Potri.002G150800 [exp] 486 / 4e-164 AT2G45590 563 / 0.0 Protein kinase superfamily protein (.1) Potri.001G043700 [exp] 164 / 2e-42 AT1G80870 721 / 0.0 Protein kinase superfamily protein (.1) Potri.003G183100 [exp] 162 / 8e-42 AT1G80870 786 / 0.0 Protein kinase superfamily protein (.1) Potri.014G143100 [exp] 146 / 3e-38 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.004G232400 [exp] 147 / 1e-36 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G025700 [exp] 142 / 2e-36 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.016G140200 [exp] 144 / 9e-36 AT5G01950 1018 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10027393 pacid=23144552 polypeptide=Lus10027393 locus=Lus10027393.g ID=Lus10027393.BGIv1.0 annot-version=v1.0 ATGCCATCCCGTTCTATTCCTCCGCTGTCCCCGTCGCCGTCCCCAATCATCCCCCACCACCACCACCACTTCCCTTCTAAACTCCTCCCCCCGCTGGGTG CCGCCACCGCCGCCTTCTCCGTCTTCCTCATCTTCGCTGCCTGCTTCCGCAAGCTCACCCACAAGCGGACAGTCCCTTCCGACTCCAAGCCGCCGCACCG GTTCCCTCACTCCGCGCTCCGCCGCGCCACCGACGGATTCTCCTCCTCGCTCCGGATCGGGCAGGGCGGTTTCGGGTCAGTATACCGGGGGACTTTACCG GAAAAGCAGCTCGTCGCCGTCAAAGTTATGGACTCCGGATCCTTACAAGGGGAGAGAGAGTTCCAGAACGAGCTCTACTTCGCTTCTAAATTAGATTCGC CTTATGTCGTAACCGCCCTCGGATTTTCCTCCGATCGGAAACGGAGGACTATGCTTTTGATTTACGATCTCATGCCGAATGGGAACTTACAGGACGCTCT TCTCCAGAGGAAGTGCCCCGAGTTGTTTGATTGGAAGCAGAGGTTTAGCGTAGTCCTTGACGTCGCTAGAGGTCTTGAGTATCTCCACTGTTTGGATCCG CCGGTTATCCACGGCGACGTGAAGCCGAGTAACGTCCTGCTCGATCAGTTCTTCTCCGCGAAGATCGCCGACTTCGGATTAGCCTGGGAGAATCAGAATC AGAATAAGAACGGCGAATCGGAGGTCCAAATCGGAGAATCGGAGGCGAAGAAGGCTGAATTAGCGGCGGAAGATTGCGGATCTGTGATTGAAACGGAGAG CGTAACGACGACCGCCGCAGCGTTCGAGGAGCTGGATCAGTCACCGGAGAGTTTCTTCCCGGCGTCAGCAACCTCGCCCGAGGCGATCAGCGCGTCTCCG GAGACGGTACCGATCTCGCCGGAGGTGATTGTGAACATCGACAAGGTTAATAACGTGTCCGATAAGAAGGTAGCGAAGAGCGGAAGTAAGGAGTGGTGGT GGAAGCAGTCCGCGGAGGAGAATGCTCCGGTGAAGGACTATGTGATGGAGTGGATTGGAACGGAGATAAAGAGAGAGAGGCCGAATAACGATTGGATTAG TTCAACTCCATCAACCAGCAACCAAAAACAGCAGCCGATTAGTAAGAAGAAGAAGAAGAAGAGATTGGATTGGTGGGTGTCGCTAGACGAAGAAAAGGAA AAGAGGATTTTGAAGAAAGAAAGGAAACGAGCTCCGAGGGAATGGTGGAAGGAGGAGTATTGCGACGAGCTCGAGAAGAAGAACAAAAAGAAGCAGAAGA AGCTGAAGAACGAATTAGGAGTTGCAGAACAAGATTGGTGGCCTGGAGATTACGACGAGGAATCACACGGAAAGAAGAACAAGAAATTCAAAAAGAACAA AAGCAGAGGAGGTAGCCAAGGAAGCATAGATTGGTTCAGTGGAGAGCTCTTCAGAAGAAGATTCAACAGCCATGATTCAATGAGTGGAGATTTAACCATA CCAAAGAGCGGCGGGGTAAGCAGTACTCCTAGCATGAGAGGGACAGTTTGTTACGTGGCGCCGGAGTACGGTGGCGGCCAATTGTCGGATAAATCCGACG TTTACAGCTTCGGGGTATTGGTTTTAGTTGTAATAGCAGGGAGGAGGCCGCTTCAGGTGACAAATTCGCCAATGGCGGAGTTTCAGAGGGCGAATTTGAT ACATTGGGCGAGGAATTTGGCGAGGAGTGGGAAGGTTATCGATCTTGTTGATCAGTCTGTGAAGGGTTTGGATGTTGAACAAGCTACGTTGTGTATTACT GTGGCGTTGCTTTGCTTGCAGAAGTCTCCGGTGGCCCGGCCTTCGATGAAGGAGGTTGTTGGCATGCTCAATGGTAGTGTGGAGGTTCCTCCATTGCCTA CTGAGTTTTCGCCATCTCCTCCTTCGCGGTTTCCGTTCAAATCGAGAACTCGGAGGAGCAAGGCCGTGTAA
AA sequence Show only first row Show all	>Lus10027393 pacid=23144552 polypeptide=Lus10027393 locus=Lus10027393.g ID=Lus10027393.BGIv1.0 annot-version=v1.0 MPSRSIPPLSPSPSPIIPHHHHHFPSKLLPPLGAATAAFSVFLIFAACFRKLTHKRTVPSDSKPPHRFPHSALRRATDGFSSSLRIGQGGFGSVYRGTLP EKQLVAVKVMDSGSLQGEREFQNELYFASKLDSPYVVTALGFSSDRKRRTMLLIYDLMPNGNLQDALLQRKCPELFDWKQRFSVVLDVARGLEYLHCLDP PVIHGDVKPSNVLLDQFFSAKIADFGLAWENQNQNKNGESEVQIGESEAKKAELAAEDCGSVIETESVTTTAAAFEELDQSPESFFPASATSPEAISASP ETVPISPEVIVNIDKVNNVSDKKVAKSGSKEWWWKQSAEENAPVKDYVMEWIGTEIKRERPNNDWISSTPSTSNQKQQPISKKKKKKRLDWWVSLDEEKE KRILKKERKRAPREWWKEEYCDELEKKNKKKQKKLKNELGVAEQDWWPGDYDEESHGKKNKKFKKNKSRGGSQGSIDWFSGELFRRRFNSHDSMSGDLTI PKSGGVSSTPSMRGTVCYVAPEYGGGQLSDKSDVYSFGVLVLVVIAGRRPLQVTNSPMAEFQRANLIHWARNLARSGKVIDLVDQSVKGLDVEQATLCIT VALLCLQKSPVARPSMKEVVGMLNGSVEVPPLPTEFSPSPPSRFPFKSRTRRSKAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25390			Protein kinase superfamily pro...		Lus10027393 [exp]	0	1
AT5G41020	MYB		myb family transcription facto...		Lus10041714 [exp]	1.0	0.9053
AT4G30010			unknown protein		Lus10015329 [exp]	8.1	0.8770
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Lus10023355 [exp]	8.4	0.8754
AT5G43490			unknown protein		Lus10002352 [exp]	9.2	0.8628
AT1G31830			Amino acid permease family pro...		Lus10012153 [exp]	9.7	0.8800
AT2G24580			FAD-dependent oxidoreductase f...		Lus10020132 [exp]	12.7	0.8452
AT1G76810			eukaryotic translation initiat...		Lus10030500 [exp]	13.0	0.8922
AT2G33730			P-loop containing nucleoside t...		Lus10015187 [exp]	13.1	0.8849
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Lus10010326 [exp]	14.1	0.8730
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10035935 [exp]	17.3	0.8512

Compare expression of checked genes

Lus10027393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.