Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25400 82 / 3e-19 bHLH bHLH118 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51780 80 / 3e-18 bHLH bHLH036 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G25410 76 / 1e-16 bHLH bHLH126 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G12540 73 / 3e-15 bHLH bHLH055 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G62975 66 / 1e-12 bHLH bHLH125 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51790 64 / 2e-12 bHLH bHLH120 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G20970 62 / 2e-11 bHLH bHLH162 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G04150 43 / 0.0001 bHLH bHLH101 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031675 [exp] 328 / 8e-115 AT4G25400 94 / 4e-24 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031677 [exp] 82 / 2e-18 AT5G51780 143 / 2e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027394 [exp] 82 / 3e-18 AT5G51780 149 / 9e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027395 [exp] 79 / 2e-17 AT5G51780 138 / 9e-41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007049 [exp] 77 / 2e-16 AT1G62975 138 / 3e-39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031676 [exp] 76 / 3e-16 AT5G51780 119 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042128 [exp] 51 / 9e-08 AT4G20970 96 / 6e-25 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10006707 [exp] 45 / 1e-05 AT1G62975 89 / 8e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024812 [exp] 42 / 0.0002 AT1G49770 156 / 6e-46 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G134400 [exp] 138 / 7e-40 AT5G51790 107 / 2e-28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G132100 [exp] 127 / 9e-36 AT4G25410 120 / 3e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G113400 [exp] 92 / 4e-22 AT4G25410 124 / 6e-35 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G132000 [exp] 91 / 7e-22 AT5G51790 154 / 6e-47 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G134300 [exp] 82 / 1e-18 AT5G51780 143 / 1e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G044400 [exp] 64 / 2e-12 AT4G20970 150 / 3e-46 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G053400 [exp] 64 / 6e-12 AT4G20970 160 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G079100 [exp] 52 / 3e-08 AT4G20970 105 / 6e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G099500 [exp] 43 / 8e-05 AT4G20970 83 / 2e-19 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10027396 pacid=23144598 polypeptide=Lus10027396 locus=Lus10027396.g ID=Lus10027396.BGIv1.0 annot-version=v1.0 ATGTTCTCGTTCTCGTACGATGCTCCCCAACAACCGGAAGATTGTGTTGTCGATGATTTTCTGATCTGGGCTGCTTCCACCACCACCGCCGCGGCGGCGG CCAATGTTTACACGCACTACTCTGCTCCACCACCACCAGTAATACTACAACCTTATAAAACGGGCGATGAAACCCTCAAAAGCATCGCCCTTGGTTCGGG CCGCACCGGCGGCGGGGATGAGGATAGGAAGCTGAGCCGGAAGGAGATCGAACGTCGGAGGAGGCAGCAGATGTCGGATCTCCATTCTTCACTCATCTCC CTCTTGCCCCAACCCTCCCGCAAGGGAAAGAAGTCGTCGTTGTCGGATCAGATGGACGAGGTGGCGAACTACATCAATCACCTGAAGAGCAACGTTCAAG AACTGAGCAACAGAAGAGACAATCTTATCAAAGGAATGACAAGGGCATTACCGTCATCCAACAATTATTCCTCCTCCGCCACTTCAAGTAACTCCGACGT GGACAATGCTACCAGCTCGGTCACCGTACGGCAGCGTTTCGACGGGGTGGAGGTGGTGATAAGCCGCGGCGGGTTTGTACTTTCGAAGGTTATGGAAGCT GTAATAGAAGAAGGGTTTGATATCATGAGTTGCATTTCAACTCAAATAGGTGGACGCTTCTACAACACCATGCAATGCCAGATTAGCTCGAGAGAGGAGT CTACGGTCGAGCGGAATAGATCTTTAGAGGTGCGAGAGTGA
AA sequence Show only first row Show all	>Lus10027396 pacid=23144598 polypeptide=Lus10027396 locus=Lus10027396.g ID=Lus10027396.BGIv1.0 annot-version=v1.0 MFSFSYDAPQQPEDCVVDDFLIWAASTTTAAAAANVYTHYSAPPPPVILQPYKTGDETLKSIALGSGRTGGGDEDRKLSRKEIERRRRQQMSDLHSSLIS LLPQPSRKGKKSSLSDQMDEVANYINHLKSNVQELSNRRDNLIKGMTRALPSSNNYSSSATSSNSDVDNATSSVTVRQRFDGVEVVISRGGFVLSKVMEA VIEEGFDIMSCISTQIGGRFYNTMQCQISSREESTVERNRSLEVRE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25400	bHLH	bHLH118	basic helix-loop-helix (bHLH) ...		Lus10027396 [exp]	0	1
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10000709 [exp]	1.4	0.8324
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031162 [exp]	3.2	0.8319
AT5G62480		GST14B, ATGSTU9	GLUTATHIONE S-TRANSFERASE 14B,...		Lus10023595 [exp]	4.2	0.7729
AT1G23850			unknown protein		Lus10014532 [exp]	5.9	0.7853
AT5G43650	bHLH	BHLH92, bHLH092	basic helix-loop-helix (bHLH) ...		Lus10008804 [exp]	10.2	0.7270
					Lus10028109 [exp]	13.0	0.7835
					Lus10016514 [exp]	13.5	0.7375
AT2G19050			GDSL-like Lipase/Acylhydrolase...		Lus10002771 [exp]	15.0	0.7377
					Lus10004769 [exp]	17.0	0.7526
AT1G78690			Phospholipid/glycerol acyltran...		Lus10004768 [exp]	21.4	0.7482

Compare expression of checked genes

Lus10027396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.