Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25420 514 / 0 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G07200 513 / 0 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT5G51810 506 / 1e-180 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT1G60980 492 / 4e-175 ATGA20OX4 gibberellin 20-oxidase 4 (.1) AT1G44090 349 / 2e-118 GA2OX5, ATGA20OX5 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5, gibberellin 20-oxidase 5 (.1) AT5G05600 193 / 6e-58 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 187 / 2e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G19010 175 / 2e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT3G55970 171 / 1e-49 ATJRG21 jasmonate-regulated gene 21 (.1) AT5G24530 170 / 2e-49 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031671 [exp] 742 / 0 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) Lus10015016 [exp] 588 / 0 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006722 [exp] 584 / 0 AT1G60980 489 / 5e-174 gibberellin 20-oxidase 4 (.1) Lus10006350 [exp] 580 / 0 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10041390 [exp] 496 / 2e-176 AT5G51810 468 / 2e-165 gibberellin 20 oxidase 2 (.1) Lus10036539 [exp] 493 / 3e-175 AT5G51810 464 / 3e-164 gibberellin 20 oxidase 2 (.1) Lus10038894 [exp] 428 / 7e-150 AT5G51810 354 / 7e-121 gibberellin 20 oxidase 2 (.1) Lus10030185 [exp] 184 / 1e-54 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 179 / 9e-53 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G134600 [exp] 588 / 0 AT5G51810 525 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.012G132400 [exp] 572 / 0 AT5G51810 522 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.002G151300 [exp] 549 / 0 AT4G25420 503 / 1e-179 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G073700 [exp] 523 / 0 AT4G25420 481 / 9e-171 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.007G103800 [exp] 417 / 3e-145 AT5G51810 408 / 6e-142 gibberellin 20 oxidase 2 (.1) Potri.005G065400 [exp] 404 / 3e-140 AT5G51810 402 / 8e-140 gibberellin 20 oxidase 2 (.1) Potri.005G184400 [exp] 387 / 5e-134 AT5G51810 380 / 5e-131 gibberellin 20 oxidase 2 (.1) Potri.005G184200 [exp] 375 / 2e-129 AT5G51810 383 / 1e-132 gibberellin 20 oxidase 2 (.1) Potri.011G150100 [exp] 198 / 3e-60 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 198 / 3e-60 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10027399 pacid=23144628 polypeptide=Lus10027399 locus=Lus10027399.g ID=Lus10027399.BGIv1.0 annot-version=v1.0 ATGGCGGTCGTCGACACAGCAAAATCCCTCCCTTCAACCCGTAAACCCAAACAGAACCAAACCCAGAACTCCGCCTCTCTAGTCTTCGACGCCAAGCTCC TAAACCACGAATCCAACATTCCCAGCCAGTTCATCTGGCCCGAACACGAGAAGCCCAAGGGCAATGCGCCGGAGCTCCAAGTCCCGGTGATCGACCTCGC CGGATTCCTCTCCGGGGATCCCGTCCAAACCTCCAAATCCGCGGAACTCATCGGAGAAGCCTGCCGGAAACACGGATTTTTCCTCGTCGCTAACCACGGC GTTGAAAGCAAGCTCCTTTCCGACGCTCACAGATACATGGACAGCTTCTTCGAATTACCGCTCCCGGAGAAACAAAAGGCTCAGAGAAAGCTAGGAGAGA GCGCCGGTTACGCCAGTAGCTTCACCGGAAGATTCTCCTCCAAGCTCCCCTGGAAAGAAACGCTGTCGTTTAGATTCTTCAATGCTGACGATGGCTCCAG TAAAGTTGTCCGTGATTACCTCCTCAACACAATGGGTGAAGATTTCTCCGACTTCGGGAATGTGTACCAGGAGTACTGTGAGGCGATGAGCACGTTGTCG TTGAGGATCATGGAGCTGTTGGGGATGAGTTTAGGGGTGAAGAAGAGGACGGAGTTTAGGGAATTTTTCCAAGGGAATGATTCGATAATGAGGCTGAACT ATTACCCACCATGTCAGAAACCTGAGGCCACGTTAGGAACAGGGCCACACTGTGATCCGACGTCGCTAACGATCCTACATCAGGACCAAGTGGGAGGACT CCAAGTGTTTGTGGACAACGAGTGGCGCTCTATCACCCCCAATTCCGATGCTTTTGTCGTTAACATTGGCGACACTTTCATGGCGCTGTCAAACGGTCAG TTCAAGAGCTGTCTACATAGAGCAGTGGTGAACAGCAAGACAGCGAGGAAATCACTGGCCTTCTTCCTATGCCCAAAGGGGGACAAAGTGGTTAGCCCGC CAGCCGAACTGGTCGACGAGAGTAACCCGAGGGTTTACCCGGATTTCACCTGGCCTACTCTGCTGGAGTTCACACAAAAGCATTACAGAGCCGACATGAA TACCCTCGATGCCTTCAAAAACTGGCTTCTCAACCGAACTCGACAACACATCAATTAG
AA sequence Show only first row Show all	>Lus10027399 pacid=23144628 polypeptide=Lus10027399 locus=Lus10027399.g ID=Lus10027399.BGIv1.0 annot-version=v1.0 MAVVDTAKSLPSTRKPKQNQTQNSASLVFDAKLLNHESNIPSQFIWPEHEKPKGNAPELQVPVIDLAGFLSGDPVQTSKSAELIGEACRKHGFFLVANHG VESKLLSDAHRYMDSFFELPLPEKQKAQRKLGESAGYASSFTGRFSSKLPWKETLSFRFFNADDGSSKVVRDYLLNTMGEDFSDFGNVYQEYCEAMSTLS LRIMELLGMSLGVKKRTEFREFFQGNDSIMRLNYYPPCQKPEATLGTGPHCDPTSLTILHQDQVGGLQVFVDNEWRSITPNSDAFVVNIGDTFMALSNGQ FKSCLHRAVVNSKTARKSLAFFLCPKGDKVVSPPAELVDESNPRVYPDFTWPTLLEFTQKHYRADMNTLDAFKNWLLNRTRQHIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Lus10027399 [exp]	0	1
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10014889 [exp]	9.4	0.7808
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018887 [exp]	9.5	0.7870
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10020875 [exp]	45.9	0.7664
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	53.5	0.7623
AT5G15140			Galactose mutarotase-like supe...		Lus10030673 [exp]	62.2	0.7523
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10009174 [exp]	74.9	0.7401
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10023485 [exp]	79.3	0.7370
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10001370 [exp]	92.2	0.7151
AT2G42380	bZIP	ATBZIP34	Basic-leucine zipper (bZIP) tr...		Lus10017656 [exp]	95.3	0.7183
AT2G23690			unknown protein		Lus10016785 [exp]	95.8	0.6427

Compare expression of checked genes

Lus10027399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.