Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51820 942 / 0 STF1, PGM1, ATPGMP, PGM STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) AT1G70730 642 / 0 PGM2 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3) AT1G23190 642 / 0 PGM3 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031669 [exp] 1110 / 0 AT5G51820 1003 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) Lus10001596 [exp] 665 / 0 AT1G23190 1024 / 0.0 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1) Lus10021777 [exp] 661 / 0 AT1G70730 1026 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3) Lus10003712 [exp] 659 / 0 AT1G23190 1017 / 0.0 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1) Lus10034595 [exp] 657 / 0 AT1G70730 1017 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G134700 [exp] 987 / 0 AT5G51820 1033 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) Potri.012G132500 [exp] 984 / 0 AT5G51820 1029 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) Potri.008G132500 [exp] 656 / 0 AT1G23190 987 / 0.0 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1) Potri.010G109500 [exp] 654 / 0 AT1G70730 1006 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02878 [flax] [poplar] PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 [flax] [poplar] PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 [flax] [poplar] PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Representative CDS sequence Show only first row Show all	>Lus10027400 pacid=23144549 polypeptide=Lus10027400 locus=Lus10027400.g ID=Lus10027400.BGIv1.0 annot-version=v1.0 ATGGCGCCTTCTCTCTGTTGCTCCAGACTGGAGAATTTCGTCTTCTCTTCCGCGCTCTTCAGGCTGAAGAAGCAGCATCAGCGCCAGCCTAGTGTTGTTA GAAATGGTGGTATCGCATTGCTCTCCTCCGCTACTTCCAGGCTCCGCTCTCGCTCGTTCTCCGTCAGTGCTGTCTCTCCGCCGTCTTCTCCCGCCACCGT TGCCGAACCGGAAGGGATCAAGGTTAGTTCGGTGCCGACGAAGCCTATTGAAGGCCAGAAGACGGGAACCAGCGGACTCCGTAAAAAGGTGAAAGTGTTC AAGGAAGAGAACTATCTTGCCAATTGGATTCAGGCATTGTTCAATTCATTGCCTCCGGAGGATTATAAGAATGGATTGCTAGTATTAGGTGGGGATGGTC GTTACTTCAACAAAGAAGCTGCACAGATAATCATCAAAATTGCTGCTGGAAATGGTGTTGGCAAAATCCTTGTGGGCAAGGATGGCATCCTTTCTACACC GGCCGTCTCTGCTGTTATCAGGAAAAGAAAGGCCAACGGTGGATTCATAATGAGTGCGAGTCATAATCCTGGGGGCCCTGAGTACGATTGGGGCATCAAG TTTAATTACAGCAGCGGGCAGCCTGCCCCCGAGTCAATCACGGACAAGATCTATGGAAATACTCTCTCTATCTCTGATATTAAGACAGCTGACATTCCTG ATATTAACCTGTCTCGTCTTGGAGTTACTAACTACGGGAGCTTCTCCGTTGAAGTAGTAGATCCAGTTTCCGATTACTTGGAGCTAATGGAGAATGTATT TGATTTTGAACTTATCAAAAGTCTCGTTTCACGTCCTAATTTCAGGTTCATATTCGACGCAATGCATGCTGTTACTGGTGCTTATGCGAAGCCTATATTT GTGGACAAGCTAGGAGCTAGTATGGATTCAATTTTGAATGGAGTCCCTCTTGAAGATTTTGGGCATGGCCATCCAGATCCCAATCTTACATATGCAATGG AACTGGTTTTGATTATGTTTGGTGGAAATGGACCTGATTTTGGAGCTGCTAGTGACGGAGACGGTGATCGCAACATGATCCTGGGCAAAGGATTTTTCGT AACTCCTTCGGATTCGGTTGCTATAATTGCTGCTAATGCTCAAGAAGCCATCCCTTACTTCAAGAGTGGACCTAAGGGTTTAGCTCGGTCAATGCCAACC AGTGGTGCTCTTGACCGTGTCGCTGAAAAGCTAAATCTTCAATTTTTTGAGGTACCCACCGGTTGGAAATTTTTCGGCAACCTAATGGATGCTGAGAAAT TATCGATCTGCGGAGAAGAAAGTTTCGGTACGGGATCAGATCACATTCGTGAGAAAGATGGTATATGGGCCGTGCTAGCTTGGCTCTCAATTATTGCCCA CAAAAACAAAGACAAGAAACCAGGGGAGAAGCTAGTCTCAGTTGCTGATGTTGTTAAAGAACACTGGGCAACTTATGGAAGAAACTTCTTCTCGAGATAT GATTATGAGGAATGTGAATCTGAAGGAGCCAACAAAATGATTGAACACCTAAGAGGCTTGATCACCGAGAGCAAACCGGGTGACCAATATGGAAGCTACA CGCTGAAGTTTGCAGACGACTTCTCATACACCGATCCCGTTGATGGTAGTGTGGCGTCGAAACAAGGTGTCCGGTTCGTGTTCAGTGATGGGTCAAGGAT CATCTTCCGCTTATCAGTGCTTTCATTGTGCATGAGCCAGGGAACCGGATCGGCAGGCGCAACAGTAAGAATCTACATCGAGCAGTTCGAACCGGATGTC TCGAAACACGACCTGGATGCACAAAAGGCACTGAAGCCCCTCATAGGTCTCGTACCGGTTGCCATCGATTTGATTCTGTTTTCTGTACATTTTTACGTAT ACATCGCTCTCACTTACTTAGGGTACATTTCCCGGTTTCAGATTTGGCACTCTCGGTCTCGAAGCTGA
AA sequence Show only first row Show all	>Lus10027400 pacid=23144549 polypeptide=Lus10027400 locus=Lus10027400.g ID=Lus10027400.BGIv1.0 annot-version=v1.0 MAPSLCCSRLENFVFSSALFRLKKQHQRQPSVVRNGGIALLSSATSRLRSRSFSVSAVSPPSSPATVAEPEGIKVSSVPTKPIEGQKTGTSGLRKKVKVF KEENYLANWIQALFNSLPPEDYKNGLLVLGGDGRYFNKEAAQIIIKIAAGNGVGKILVGKDGILSTPAVSAVIRKRKANGGFIMSASHNPGGPEYDWGIK FNYSSGQPAPESITDKIYGNTLSISDIKTADIPDINLSRLGVTNYGSFSVEVVDPVSDYLELMENVFDFELIKSLVSRPNFRFIFDAMHAVTGAYAKPIF VDKLGASMDSILNGVPLEDFGHGHPDPNLTYAMELVLIMFGGNGPDFGAASDGDGDRNMILGKGFFVTPSDSVAIIAANAQEAIPYFKSGPKGLARSMPT SGALDRVAEKLNLQFFEVPTGWKFFGNLMDAEKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAHKNKDKKPGEKLVSVADVVKEHWATYGRNFFSRY DYEECESEGANKMIEHLRGLITESKPGDQYGSYTLKFADDFSYTDPVDGSVASKQGVRFVFSDGSRIIFRLSVLSLCMSQGTGSAGATVRIYIEQFEPDV SKHDLDAQKALKPLIGLVPVAIDLILFSVHFYVYIALTYLGYISRFQIWHSRSRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10027400 [exp]	0	1
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10008779 [exp]	2.4	0.8868
AT1G54570			Esterase/lipase/thioesterase f...		Lus10018998 [exp]	3.5	0.8703
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10029118 [exp]	3.6	0.8889
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Lus10010567 [exp]	3.7	0.8509
AT4G18130		PHYE	phytochrome E (.1)		Lus10011967 [exp]	3.9	0.8843
AT1G12330			unknown protein		Lus10028918 [exp]	6.5	0.8364
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10016195 [exp]	6.9	0.8831
AT2G40130			Double Clp-N motif-containing ...		Lus10040206 [exp]	10.2	0.8699
AT2G38680			5'-nucleotidases;magnesium ion...		Lus10008973 [exp]	10.2	0.8319
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10022236 [exp]	13.1	0.8637

Compare expression of checked genes

Lus10027400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.