Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51830 485 / 3e-173 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 432 / 7e-152 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 409 / 1e-143 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 392 / 7e-137 pfkB-like carbohydrate kinase family protein (.1) AT1G06030 385 / 3e-134 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 382 / 3e-133 STH pfkB-like carbohydrate kinase family protein (.1) AT1G06020 381 / 2e-132 pfkB-like carbohydrate kinase family protein (.1) AT1G50390 158 / 8e-48 pfkB-like carbohydrate kinase family protein (.1) AT3G54090 150 / 3e-41 FLN1 fructokinase-like 1 (.1) AT1G69200 146 / 4e-39 FLN2 fructokinase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031668 [exp] 601 / 0 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 432 / 1e-151 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028517 [exp] 426 / 3e-149 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10040562 [exp] 385 / 5e-134 AT4G10260 539 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009526 [exp] 385 / 6e-134 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 381 / 2e-132 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 379 / 1e-131 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 370 / 1e-128 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Lus10020346 [exp] 318 / 8e-109 AT3G59480 441 / 8e-158 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G132700 [exp] 503 / 1e-180 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 496 / 9e-178 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 447 / 5e-158 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 420 / 4e-147 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 410 / 7e-144 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 388 / 1e-134 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 385 / 5e-134 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.008G097300 [exp] 162 / 5e-45 AT1G69200 598 / 0.0 fructokinase-like 2 (.1) Potri.016G109600 [exp] 127 / 6e-33 AT3G54090 630 / 0.0 fructokinase-like 1 (.1) Potri.014G074125 [exp] 85 / 3e-20 AT5G51830 80 / 7e-19 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10027401 pacid=23144447 polypeptide=Lus10027401 locus=Lus10027401.g ID=Lus10027401.BGIv1.0 annot-version=v1.0 ATGTCTGTCTGCAACACTTTGGATTCCAAAATTGGTGTAGTTGAATCGGCCAAGGATCCTGGCTCAAAGTCACTGGTTGTTTGCTTTGGGGAAATGCTGA TCGACTTTGTGCCAACGGTTAATGGCGTTTCACTAGCTGAGGCTCCTGCTTTCAAGAAGGCTCCCGGCGGGGCTCCTGCCAATGTCGCTGTTGGCGTTTC GAGACTGGGCGGTTCGTCAGCTTTTATAGGCAAGTTGGGTGATGATGAATTCGGGCATATGTTGGATGATATTCTGAAGCAGAACAATGTTGATAACTCT GGCGTGCGGTTTGATCCCTATGCGAGGACAGCCCTGGCGTTTGTGACGCTCAGAGCTGATGGGGAACGTGAATTCCTCTTCTTTCGGCATCCAAGTGCAG ACATGCTACTTAAGGAGTCAGAGCTCCAGATTGACATTCTGAAGCAAGCCAAAGTCTTCCACTACGGTTCAATTAGTTTGATCGCAGACCCATGCAGGTC AGCTCAAATTGCTGCACTGAAAACGGTCAAAACTTCCGGTGGCATTCTGTCGTATGATCCAAATCTGAGACTGGCATTATGGCCATCCCCAGAGGCTGCT AAAGAAGGAATTATGAGCATATGGAATGAGGCTGATGTTATTAAGATAAGCGAGGATGAAATTGTGTTCTTAACTGGAGGAGATGATCCCAACGACGATG ATGTCGTCCTAAAGAAGCTCTTTCATCCTAATTTGACCCTTTTGATTGTAACTGAAGGGTCACAGGGCTGTAGATACTACACAAAGGAGTTCAAGGGCAG AGTTCCGGGAATAAAGGTAAAACCCGTTGACACAACCGGTGCAGGCGATGCGTTTGTTGGTGGCCTCCTCAGCAGCCTGGCTTCCGACACAACTATTCTC AAGGATGAGAAGAGGTTAAGAGAAGCCCTCTACTTCGCCAACGCCTGTGGAGCTGTGACGGTGACTGAGAGAGGTGCGATCCCGGCACTGCCGACCATGG AAGCGGTGCTGAAACTCATAAAGCCGGTTGCTTCATGA
AA sequence Show only first row Show all	>Lus10027401 pacid=23144447 polypeptide=Lus10027401 locus=Lus10027401.g ID=Lus10027401.BGIv1.0 annot-version=v1.0 MSVCNTLDSKIGVVESAKDPGSKSLVVCFGEMLIDFVPTVNGVSLAEAPAFKKAPGGAPANVAVGVSRLGGSSAFIGKLGDDEFGHMLDDILKQNNVDNS GVRFDPYARTALAFVTLRADGEREFLFFRHPSADMLLKESELQIDILKQAKVFHYGSISLIADPCRSAQIAALKTVKTSGGILSYDPNLRLALWPSPEAA KEGIMSIWNEADVIKISEDEIVFLTGGDDPNDDDVVLKKLFHPNLTLLIVTEGSQGCRYYTKEFKGRVPGIKVKPVDTTGAGDAFVGGLLSSLASDTTIL KDEKRLREALYFANACGAVTVTERGAIPALPTMEAVLKLIKPVAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10027401 [exp]	0	1
AT2G30050			transducin family protein / WD...		Lus10011429 [exp]	1.4	0.9688
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	3.7	0.9662
AT2G36460			Aldolase superfamily protein (...		Lus10014373 [exp]	3.9	0.9646
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10036976 [exp]	3.9	0.9651
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004938 [exp]	4.0	0.9651
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10035118 [exp]	4.2	0.9524
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021051 [exp]	5.5	0.9602
AT2G20820			unknown protein		Lus10031625 [exp]	6.2	0.9468
AT3G62120			Class II aaRS and biotin synth...		Lus10016281 [exp]	8.0	0.9545
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Lus10032620 [exp]	8.5	0.9401

Compare expression of checked genes

Lus10027401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.