Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62170 135 / 3e-34 unknown protein AT5G51850 105 / 2e-24 unknown protein AT4G25430 80 / 4e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031666 [exp] 454 / 1e-153 AT5G62170 213 / 3e-59 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G135200 [exp] 144 / 2e-37 AT5G62170 239 / 2e-68 unknown protein Potri.012G132900 [exp] 142 / 1e-36 AT5G62170 247 / 1e-71 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027402 pacid=23144542 polypeptide=Lus10027402 locus=Lus10027402.g ID=Lus10027402.BGIv1.0 annot-version=v1.0 ATGTCTACCGATGGCATTGACGGAACGATGCACAAACTTGATGAGTGCAAGCCGGGTGCCCGCATTTCGAATTTTCAAAATGAGAATGGTACTGGGGAGG AGGAAGCAAATCCTCCAAAAGAAAATCCACCTCCAAAAAACCTGCCCCAGACGGCGGAGGAGGAGGAATGGCGGGCGGAACCGNNNGCCGCAACCGCCGC CGCTTCTGCTCCGGCGGGTTGCATGTGTGCAGTGTTCCAGTTGTTCGACTTCAAACAGCTCCCTTTCTCCACCCCTCTCAACCACCGCCCTTCTTTCCAC ATCCCACACCACCCTCCCTCAATTGCTAAAGGCTCGGAAGCGCCGAGGAATAGCTTGGAGCTACTGGAGGAAATGGAGGACAGAGCTTCATCGCTGTCGC TAGCCGTTAAAGCATCTCATCCGCATAATTTAAACATCCCAATGGGGATTCAAATCAAGACAACCCGAGGAAATACCCGACCCGGATCGGCGGGGCAGAG CGATTCGGAGACGGTTCCATCTTCCCCAGCGACCAAGACTCCGACTTTGGTAGCCAGATTGATGGGGCTGGATCTTCTCCCGGAGAATCAGAACTATTCT CCTCGTTCCTCTGCTTCTTCTTCGACGACGCCGTATAAGCTCTCCCATCATCTCACCAGCCGTCCGAAGCAGCAGGCATCCACTTACAGCAACCACCGGC GGAGTTGCGATGATTCCGGGGGCGGCGGGAGGTCTCTCCCTGAGACGCCTAGAATTTCATTGGCGAGGAGGTCTGATGTTGACCACTACCACCACCGTTT GTCGCTCCAGCTCAACAACAAGGAGAACACAAACACAAGGTCCTCGAGCGAGGAGCTCGTGATCTCCCGGATCAAAGCGTTGAGGCTTAACGGAAGAGAT TTGAAGCCGGAGGAGGAATGCCGGAGCCCGAGGCAGTACGCGAGGCAGATTGTGAAGCAGGTGAAGGAGAGCGTGAGTCGAAGAGTCGGTTTGCTTGACA TTACTAATAATAATCAGATGAAAAACAGAGATCCTCCGCTGATGGAAAAACAGGGTCGACGAAGCGGTGGCGGCGGCGGAGGAGGAACAGGGAGTAGGAG TAGGCGGGATAACGACCTGGTGAAGTCGAAGAAGATCACCAAGTTGTTGACGAGGCTGGCGGAGGAGGAAGAAGAGGAGGGTTCGTTTGTCAATTTGGTT CCCTTCAAAAAGGACCACAAAATATCTGACTCGAGTAAAAAGTCGATTTTGTCAGAGGCTCCCATCAGTGGTCAGCCGCTGCCGGACAATGCCGGGGGCT CCGCGGGGGCGGAACAATGA
AA sequence Show only first row Show all	>Lus10027402 pacid=23144542 polypeptide=Lus10027402 locus=Lus10027402.g ID=Lus10027402.BGIv1.0 annot-version=v1.0 MSTDGIDGTMHKLDECKPGARISNFQNENGTGEEEANPPKENPPPKNLPQTAEEEEWRAEPXAATAAASAPAGCMCAVFQLFDFKQLPFSTPLNHRPSFH IPHHPPSIAKGSEAPRNSLELLEEMEDRASSLSLAVKASHPHNLNIPMGIQIKTTRGNTRPGSAGQSDSETVPSSPATKTPTLVARLMGLDLLPENQNYS PRSSASSSTTPYKLSHHLTSRPKQQASTYSNHRRSCDDSGGGGRSLPETPRISLARRSDVDHYHHRLSLQLNNKENTNTRSSSEELVISRIKALRLNGRD LKPEEECRSPRQYARQIVKQVKESVSRRVGLLDITNNNQMKNRDPPLMEKQGRRSGGGGGGGTGSRSRRDNDLVKSKKITKLLTRLAEEEEEEGSFVNLV PFKKDHKISDSSKKSILSEAPISGQPLPDNAGGSAGAEQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62170			unknown protein		Lus10027402 [exp]	0	1
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10034315 [exp]	1.7	0.9168
AT5G62170			unknown protein		Lus10027403 [exp]	2.6	0.8803
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10004934 [exp]	3.5	0.8975
AT3G19740			P-loop containing nucleoside t...		Lus10010204 [exp]	8.5	0.8735
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10029669 [exp]	12.3	0.8739
AT4G14180		ATPRD1	putative recombination initiat...		Lus10002081 [exp]	13.6	0.8967
AT3G20150			Kinesin motor family protein (...		Lus10016589 [exp]	14.8	0.9032
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10012114 [exp]	14.9	0.8858
AT5G41460			Protein of unknown function (D...		Lus10028768 [exp]	18.2	0.8482
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10025810 [exp]	18.4	0.8726

Compare expression of checked genes

Lus10027402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.