Plant FIBer expression Database

Lus10027403 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62170 51 / 4e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031666
[exp]
251 / 4e-78 AT5G62170 213 / 3e-59 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G135200
[exp]
54 / 4e-08 AT5G62170 239 / 2e-68 unknown protein
Potri.012G132900
[exp]
54 / 4e-08 AT5G62170 247 / 1e-71 unknown protein
PFAM info
Representative CDS sequence
>Lus10027403 pacid=23144526 polypeptide=Lus10027403 locus=Lus10027403.g ID=Lus10027403.BGIv1.0 annot-version=v1.0
ATGGTAGTATCGCCGCCGATTGCGGTTCCGGCGGGGAGGAAGGAAGGTGGAGGGAAGAGAGTGCTGCCGCCGCAGACGTCGGATATTATACGGAACAAGC
AAGAGGAGCCGTTTGTACGTCCGTCGGCCGGAAACAGAGGCGGCGGAGGAAATATTCCCGACAAGAGGTGCAGGAAAACGCCGCTTTCAAGTAACCTACT
GCAGGGTATTTCTGTCCCTTCCATCATTCTCCCGGCGAAGAAAGATCCCGCTCCTCCGGCCACCAAAATCCTTTCTCCTAAAAAACAGGCGGACTCAAAA
CGCAGCACTTTGACACAGTTACCGAGTAGTTCGAACCATACGGCGTCGTACAGGCTAACTTCTCATCATCAGCAAGAAGCAACGAGGCCGCTCCCTTCCC
AAGAAACTGACAACAAGAAGCAAGCCGCCGAGAAACAAACAACAAGAGGCAAGCCGCCGCCGCCGCCGCCCCCTCCACCTCCGGAGATGGGCCCGCCGCA
GCGGCGGAATGCGAATCTTATCAACGACCTCTGCAGGAGAATCCGAAGCTTCCCGAACGCTGACTGTCGGGTTTTGGAAGATATCGACGCGTTGATAGAC
AAGGACTTGCCGGAGCGGTGGATGGATACGGCGGCGGAGGAAGAAGGGGAAGGGATCGTGACGGAGGTGGAGAAGGAAATATTGGAGTCGTTGATACAAG
AAACGGCGGGAGACGTGTTGGTTTCGTTGGGGGCGAAACGGCGGCGAGCCCTTTCGCGGGGTCACGTGCTGGGTCAAGAGTTTGGTCACGTGAGGCGGAG
ATGA
AA sequence
>Lus10027403 pacid=23144526 polypeptide=Lus10027403 locus=Lus10027403.g ID=Lus10027403.BGIv1.0 annot-version=v1.0
MVVSPPIAVPAGRKEGGGKRVLPPQTSDIIRNKQEEPFVRPSAGNRGGGGNIPDKRCRKTPLSSNLLQGISVPSIILPAKKDPAPPATKILSPKKQADSK
RSTLTQLPSSSNHTASYRLTSHHQQEATRPLPSQETDNKKQAAEKQTTRGKPPPPPPPPPPEMGPPQRRNANLINDLCRRIRSFPNADCRVLEDIDALID
KDLPERWMDTAAEEEGEGIVTEVEKEILESLIQETAGDVLVSLGAKRRRALSRGHVLGQEFGHVRRR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G62170 unknown protein Lus10027403
[exp]
0 1
AT5G62170 unknown protein Lus10027402
[exp]
2.6 0.8803
AT1G68560 AXY3, TRG1, XYL... thermoinhibition resistant ger... Lus10034315
[exp]
6.0 0.8689
AT1G68560 AXY3, TRG1, XYL... thermoinhibition resistant ger... Lus10041457
[exp]
12.4 0.8551
AT5G41460 Protein of unknown function (D... Lus10028768
[exp]
13.5 0.8443
AT3G16260 TRZ4 tRNAse Z4 (.1) Lus10025810
[exp]
19.5 0.8554
AT4G30840 Transducin/WD40 repeat-like su... Lus10007707
[exp]
20.7 0.8476
AT4G14180 ATPRD1 putative recombination initiat... Lus10002081
[exp]
21.3 0.8586
AT2G38550 Transmembrane proteins 14C (.1... Lus10025221
[exp]
26.5 0.8477
AT4G23490 Protein of unknown function (D... Lus10028769
[exp]
33.5 0.8295
AT3G03060 P-loop containing nucleoside t... Lus10031211
[exp]
34.9 0.8452

Lus10027403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.