Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51890 415 / 2e-146 Peroxidase superfamily protein (.1) AT5G42180 316 / 2e-107 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT4G33420 250 / 1e-81 Peroxidase superfamily protein (.1) AT3G01190 244 / 2e-79 Peroxidase superfamily protein (.1) AT5G17820 239 / 3e-77 Peroxidase superfamily protein (.1) AT2G22420 239 / 3e-77 Peroxidase superfamily protein (.1) AT4G26010 238 / 3e-77 Peroxidase superfamily protein (.1) AT1G05260 236 / 3e-76 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT3G21770 236 / 5e-76 Peroxidase superfamily protein (.1) AT5G06720 234 / 4e-75 ATPA2 peroxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031664 [exp] 578 / 0 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10005614 [exp] 311 / 2e-105 AT5G42180 461 / 6e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10034547 [exp] 306 / 2e-103 AT5G42180 471 / 7e-169 peroxidase 64, Peroxidase superfamily protein (.1) Lus10017288 [exp] 306 / 3e-103 AT5G42180 462 / 4e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10029543 [exp] 254 / 8e-83 AT4G33420 479 / 1e-171 Peroxidase superfamily protein (.1) Lus10028736 [exp] 247 / 2e-80 AT1G05260 266 / 4e-88 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10001324 [exp] 244 / 5e-79 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10005679 [exp] 240 / 1e-77 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1) Lus10013631 [exp] 239 / 2e-77 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108900 [exp] 325 / 6e-111 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1) Potri.002G018000 [exp] 317 / 9e-108 AT5G42180 483 / 1e-173 peroxidase 64, Peroxidase superfamily protein (.1) Potri.015G138300 [exp] 315 / 1e-107 AT5G51890 330 / 6e-114 Peroxidase superfamily protein (.1) Potri.013G066800 [exp] 260 / 3e-85 AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 255 / 2e-83 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.T045500 [exp] 254 / 2e-83 AT4G33420 441 / 9e-157 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 254 / 3e-83 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.004G134800 [exp] 253 / 7e-83 AT4G33420 457 / 3e-163 Peroxidase superfamily protein (.1) Potri.018G136900 [exp] 253 / 9e-83 AT4G33420 451 / 1e-160 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 253 / 1e-82 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10027405 pacid=23144459 polypeptide=Lus10027405 locus=Lus10027405.g ID=Lus10027405.BGIv1.0 annot-version=v1.0 ATGGCTGCTCTCCGAGTTGGATGCTTTGCAACGACCCTTCTCTTGATCACACTGATCTCGTCATCACGAGGAACGTTGGATGCCCATTATTATGATCAAA CATGTCCGCAGGCTGAGGCCATTGTCTCTCAGTCGGTTCGCAATGCCTCGATCTACGACCCCAAAGTCCCTGCTCGCATCCTTAGAATGTTCTTCCATGA CTGTTTCATTAGGGGCTGTGATGCTTCTATTTTGATTGACTCTACTCCTGGAAACCAAGCTGAGAAAGATGGACCTCCGAATGTTTCGGTTCGATCGTTC TATGTGATCGACGATGCCAAAACCAAGCTCGAAAAGGCTTGTCCCGAAACGGTGTCGTGTGCTGATATCATAGCTATAGCAGCTAGAGATGTTGTAGCCA TGTCAGAAGGGCCAAGTTGGAACGTACAAAAAGGCAGAAAAGACGGCAGTATCTCAAAATCAAGCGACACCGTGAACTTGCCAGCTCCAACATTCAACGT GACACAACTAAGCCAAGCCTTTGCGAGTCGAGGCTTAGCCATCAAGGACTTAGTAGCCCTGTCTGGAGCCCACACATTAGGGTTCTCACACTGTTCTTCG TTCCAATCTCGCCTCCGAAAGTTCAGCTCCATCCACTACACCGATCCAACCATGAACCCGGAACTCGCCAACGTGTTGATGAAGAAGTGCCCTAACCCGA ACTCCAATCCTACTACAGGGACATTCCTCGATTCGACCTCTTCAAAGTTCGACAATGAGTACTTCAAACAGCTCGTGGAAGGGAAAGGGGTATTTGGATC AGACCAGTCGTTGTTTATTGATGGGAGGACAAAGGGGATCGTTAAAGGGTTTGCCAAGGATGAGGGGATGTTCTTCAGGGAATTTGCTTCTTCGATGGTG AAGCTTGGGAGTGTTGGTGTTCTTGAGAATGGTGAAGTGAGGAAGCAATGTAGGGTTGTGAATTGA
AA sequence Show only first row Show all	>Lus10027405 pacid=23144459 polypeptide=Lus10027405 locus=Lus10027405.g ID=Lus10027405.BGIv1.0 annot-version=v1.0 MAALRVGCFATTLLLITLISSSRGTLDAHYYDQTCPQAEAIVSQSVRNASIYDPKVPARILRMFFHDCFIRGCDASILIDSTPGNQAEKDGPPNVSVRSF YVIDDAKTKLEKACPETVSCADIIAIAARDVVAMSEGPSWNVQKGRKDGSISKSSDTVNLPAPTFNVTQLSQAFASRGLAIKDLVALSGAHTLGFSHCSS FQSRLRKFSSIHYTDPTMNPELANVLMKKCPNPNSNPTTGTFLDSTSSKFDNEYFKQLVEGKGVFGSDQSLFIDGRTKGIVKGFAKDEGMFFREFASSMV KLGSVGVLENGEVRKQCRVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51890			Peroxidase superfamily protein...		Lus10027405 [exp]	0	1
AT5G51890			Peroxidase superfamily protein...		Lus10031664 [exp]	1.0	0.9668
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034505 [exp]	3.0	0.9425
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10003468 [exp]	3.5	0.9501
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	6.3	0.9347
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	6.7	0.9237
AT5G59340	HD	WOX2	WUSCHEL related homeobox 2 (.1...		Lus10040840 [exp]	7.1	0.8929
AT2G38010			Neutral/alkaline non-lysosomal...		Lus10017188 [exp]	7.7	0.8586
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	8.9	0.9093
AT2G34930			disease resistance family prot...		Lus10006945 [exp]	9.9	0.8822
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034439 [exp]	11.5	0.9158

Compare expression of checked genes

Lus10027405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.