Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29760 405 / 4e-133 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 401 / 3e-132 SLO1 SLOW GROWTH 1 (.1) AT3G15930 392 / 1e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G29230 372 / 1e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31430 359 / 3e-117 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G14820 355 / 6e-114 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 351 / 1e-112 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 338 / 3e-107 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 333 / 7e-106 MEF22 mitochondrial editing factor 22 (.1) AT5G08510 319 / 1e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031661 [exp] 1124 / 0 AT2G29760 427 / 3e-141 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 380 / 2e-123 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 377 / 2e-123 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10040680 [exp] 378 / 2e-122 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 374 / 2e-122 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10009269 [exp] 359 / 3e-116 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020918 [exp] 355 / 7e-115 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 351 / 2e-112 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 348 / 1e-111 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044700 [exp] 417 / 1e-137 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G019500 [exp] 410 / 5e-136 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.003G031600 [exp] 392 / 5e-128 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G088600 [exp] 389 / 2e-127 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G217900 [exp] 382 / 4e-125 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.004G125500 [exp] 380 / 5e-125 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 375 / 1e-121 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 370 / 7e-120 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 362 / 6e-119 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G103600 [exp] 364 / 2e-118 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027408 pacid=23144480 polypeptide=Lus10027408 locus=Lus10027408.g ID=Lus10027408.BGIv1.0 annot-version=v1.0 ATGAAGAAGCTGTCAAGACCCACTTCCCAGATCCTACAAAAGCGACCGACAACGAACCTAGTTTCCACCATCTTTATCAAAGAGCGGCACGCCCAACTCA TCAGGAAGCAGCTCCAATCCGACCCATTCGCCATGGCCGACGTCGTCAAATGGTACGCTCTCTCTCCATCTCACATTCACAAAGCCCTTCTCATCTTCGC CCAACTCGACACCCCGACTCGGCCGATTTACAACAACTTGATCCGCGGCATGTCTCAGAGTGAACACCCCTTCGACGCCGTCGAGATGTATGTGAATCAA ATGTATCGTTGTGGAGTAATTGGCGACACCTTAACGATGATTTTCCTGTTCAAGGCTTGTGGTCGGGTTAGGGATGGTTTGTTTGGTGAATTGTTTCATG CGCATTGTAGGAAGCTTGGATGTGACTCGGATGTGTCAGTGTCGAATGGGTTGATGCGGATGTATGGAAATTTAGGTGATTTGGATGCTGCACGTAAGGT GTTTGACGAAATGCCTGAGAGAGACTTGGTTTCGTGGAACTCGTTGATTTGTAGCTATGCAGATTGCAAGAGGTTTAGAGAGGTTTTAGGAGTGTTTGAT TTGATGAGGGAAAGTAACGTGAAGGGTGATGCTGTGACAATGGTGAAAACAATATTAGCTTGTGTTAACTTGGGTGAGAATAAGACTGCTGATTTGATGG TTAAGTATATTGAAGAGGAAAGAGTAGAGATTGATGTTTATTTGGGGAACACCATGATTGATATGTATGGTCAGCGTGGCATAGTGGATTTAGCTCGCGG CATTTTCGACCGAATGCGAGAGAAGAACGTTGTTTCGTGGAATACCATGACCAAGGGGTATGTGAAAGCAGGGGACTTGGTTTCTGCAAGGAAAGTATTG GACGATATGCCTGTGAAGAATGTGATCTCCTGGACGAATCTGATCACAGGGTATTGTAAAGCCGAGACCTTTTCCGATGCAGTCAAAGCTTTCCAAGATA TGATGGGAGATAACTTGAAACCGGATGAGATCACAGTAGCGAGCGTACTCTCCGCCTGTGCTCGGTTGGGATGTCTCGATGCCGGGCAGGCAATTCACGA CTATATTCGTCGACACGGTATAAAAGAAGATGTTTTCGTTGGAAATGCCTTGATAGACATGTATTCCAAATGTGGCTCTGTTGAGAAAGCACGGGATGTT TTCCTCGGAATGAATCGTAAAGATAGTGTTTCGTGGACTTCGATCATATGTGGGCTCGCTGTCAATGGTCTTGCTGATGATGCAATGGAGCTATTCTCCC GGATGTTAACCGAAGGTCAACGGCCTATCCACGGTACGTTCATTGGAGTTTTGATTGCTTGCAAACATAGTGGACAGGTAGATAGAGGGTTGGAGTTTTT CGAAAGTATGGAGAAGGTTTACAGGTTAAAGCCCGAGATGAAACATTACGGATGTATTGTGGACCTCTTGAGCCGGTCCGGTAACTTGGAGAGGGCGTAC GAGTTTGTAGAAGCGATGCCGGTGGTGCCAGATGTTGTGATATGGAGGATCTTGTTAGGTGCTTGTATGCTCCATGGGAATGTAGGTTTGGCTGAGATCG TTACGAAGAAGCTTCTCGAGTTGGATCCTTCTAACAGCGGAAACTATGTCAGCTTGTCGAATGCTTATGCCGGTTCAGACCGGGGGGAAGAAGTTCAGAC CGGTGGGAAGATGCCGACGAACTGA
AA sequence Show only first row Show all	>Lus10027408 pacid=23144480 polypeptide=Lus10027408 locus=Lus10027408.g ID=Lus10027408.BGIv1.0 annot-version=v1.0 MKKLSRPTSQILQKRPTTNLVSTIFIKERHAQLIRKQLQSDPFAMADVVKWYALSPSHIHKALLIFAQLDTPTRPIYNNLIRGMSQSEHPFDAVEMYVNQ MYRCGVIGDTLTMIFLFKACGRVRDGLFGELFHAHCRKLGCDSDVSVSNGLMRMYGNLGDLDAARKVFDEMPERDLVSWNSLICSYADCKRFREVLGVFD LMRESNVKGDAVTMVKTILACVNLGENKTADLMVKYIEEERVEIDVYLGNTMIDMYGQRGIVDLARGIFDRMREKNVVSWNTMTKGYVKAGDLVSARKVL DDMPVKNVISWTNLITGYCKAETFSDAVKAFQDMMGDNLKPDEITVASVLSACARLGCLDAGQAIHDYIRRHGIKEDVFVGNALIDMYSKCGSVEKARDV FLGMNRKDSVSWTSIICGLAVNGLADDAMELFSRMLTEGQRPIHGTFIGVLIACKHSGQVDRGLEFFESMEKVYRLKPEMKHYGCIVDLLSRSGNLERAY EFVEAMPVVPDVVIWRILLGACMLHGNVGLAEIVTKKLLELDPSNSGNYVSLSNAYAGSDRGEEVQTGGKMPTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10027408 [exp]	0	1
AT1G79220			Mitochondrial transcription te...		Lus10031762 [exp]	3.0	0.8948
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019904 [exp]	8.7	0.8993
AT2G44530			Phosphoribosyltransferase fami...		Lus10027908 [exp]	9.2	0.8616
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	10.6	0.8933
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10013236 [exp]	16.2	0.8956
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10041867 [exp]	19.7	0.8622
AT5G38640			NagB/RpiA/CoA transferase-like...		Lus10038944 [exp]	21.2	0.8306
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Lus10016137 [exp]	21.6	0.8886
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10005855 [exp]	23.9	0.8563
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10019764 [exp]	23.9	0.8277

Compare expression of checked genes

Lus10027408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.