Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51970 567 / 0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) AT5G63620 111 / 6e-27 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) AT1G64710 100 / 2e-23 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G43940 99 / 8e-23 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT4G22110 96 / 1e-21 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 92 / 2e-20 GroES-like zinc-binding dehydrogenase family protein (.1) AT4G37980 85 / 2e-18 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT5G24760 85 / 3e-18 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT1G22430 85 / 6e-18 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G77120 83 / 2e-17 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031660 [exp] 726 / 0 AT5G51970 582 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10031659 [exp] 555 / 0 AT5G51970 622 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10027410 [exp] 551 / 0 AT5G51970 613 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10039625 [exp] 96 / 1e-21 AT5G63620 655 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10029549 [exp] 96 / 2e-21 AT5G63620 653 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10014104 [exp] 89 / 3e-19 AT3G19450 530 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10029759 [exp] 88 / 8e-19 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10019811 [exp] 87 / 9e-19 AT3G19450 531 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10010506 [exp] 87 / 1e-18 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G135000 [exp] 616 / 0 AT5G51970 558 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Potri.012G134900 [exp] 573 / 0 AT5G51970 651 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Potri.014G193800 [exp] 100 / 4e-23 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.002G254900 [exp] 99 / 1e-22 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.T010600 [exp] 97 / 5e-22 AT5G63620 646 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Potri.019G041600 [exp] 92 / 2e-20 AT1G22430 300 / 3e-99 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.011G152800 [exp] 91 / 5e-20 AT1G32780 540 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Potri.019G041500 [exp] 91 / 6e-20 AT1G22430 308 / 1e-102 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.018G142700 [exp] 91 / 6e-20 AT1G22430 295 / 3e-97 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.011G152900 [exp] 91 / 7e-20 AT1G32780 545 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10027409 pacid=23144590 polypeptide=Lus10027409 locus=Lus10027409.g ID=Lus10027409.BGIv1.0 annot-version=v1.0 ATGGCGAATAATGGTGGTGAAATCGCAGTGGGAAAGAGAGATGGAGGAGAGGAAGAGAACATGGCTGCTTGGCTTCTAGGTATCCAAACCCTCAAGATTC AGTCTTACCAACTCCCTACTCTTGGTAAAGTTTGCTTCTTTTCACTCAAGATTGACGATTTACCCTCTTCATCTCTCGTTGCAAAAGTAAGAAAGAAATC TCCTTTTTCAGGTCCTCATGATGTCAAGGTCCGGATAAAGGCTCTAGGCATTTGCGGAAGTGATGTGCATCATTTCAAGACTATGAGATGTGCTAATTTC ATAGTGAAGAAGCCAATGGTGATCGGGCATGAATGTGCTGGCATCATTGAAGAGATTGGCAGTGAAGTCAAGAGCCTCTCACCAGGTGACCGTGTAGCCT TAGAGCCTGGCATCAGCTGCTCAAGGTGTAACCTTTGCAAGAATGGCCGCTACAACTTGTGCCCGGAAATGAGGTTCTTTGGCTCTCCACCAACCAACGG CTCTCTTGCCAACAAGGTGGTGCATCCAGCAAGCCTATGCTACAAGCTCCCCGAGAATGTGAGCTTGGAGGAAGGAGCGATGTGCGAGCCCCTTAGCGTA GGGGTCCACGCTTGTCGTAGAGCACAGGTTGGCCCCGAGACTAGTGTCCTGATCTTGGGAGCTGGACCAATCGGGCTCATCACCTTGCTGGTTGCTCGAG CATTCGGATCCCCTCGTGTTGTGATGACCGATGTTGATGAGACCCGTCTGTCCATTGCTAAGAGCCTCGGTGCTGATGAGACTATCCAAGTCTCGACTGA TGCGAAGGATGTTAGTGAGGAAGTGATGAAAGTGCAGAATGCTATGGGATCAGGGATTGATGTTACTTTGGACTGTGTTGGATATAACAAGACCATGACT ACAGCTCTAAATGCCACACGTTCTGGTGGCAAAGTTTGCCTAATAGGGTTAGCTCTTAGTGAGATGACTGTCCCTCTTACTCCTGCTGCTGCAAGGGAAG TGGATGTGATTGGCATATTTCGGTACCGGAACACATGGCCACTCTGCCTTGATTTCTTGAAGACTGGCAAGATTGATGTGAAGCCATTGATAACTCACAG GTTTAAGTTCACACAGGAGGATATTGACTCGGCGTTCGAGACCAGTGCTCGTGGTGGGAACGCGATCAAGGTTATGTTTAACCTGTAA
AA sequence Show only first row Show all	>Lus10027409 pacid=23144590 polypeptide=Lus10027409 locus=Lus10027409.g ID=Lus10027409.BGIv1.0 annot-version=v1.0 MANNGGEIAVGKRDGGEEENMAAWLLGIQTLKIQSYQLPTLGKVCFFSLKIDDLPSSSLVAKVRKKSPFSGPHDVKVRIKALGICGSDVHHFKTMRCANF IVKKPMVIGHECAGIIEEIGSEVKSLSPGDRVALEPGISCSRCNLCKNGRYNLCPEMRFFGSPPTNGSLANKVVHPASLCYKLPENVSLEEGAMCEPLSV GVHACRRAQVGPETSVLILGAGPIGLITLLVARAFGSPRVVMTDVDETRLSIAKSLGADETIQVSTDAKDVSEEVMKVQNAMGSGIDVTLDCVGYNKTMT TALNATRSGGKVCLIGLALSEMTVPLTPAAAREVDVIGIFRYRNTWPLCLDFLKTGKIDVKPLITHRFKFTQEDIDSAFETSARGGNAIKVMFNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51970			GroES-like zinc-binding alcoho...		Lus10027409 [exp]	0	1
AT1G31910			GHMP kinase family protein (.1...		Lus10012122 [exp]	3.0	0.9454
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	3.3	0.9520
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	5.5	0.9495
AT1G29820			Magnesium transporter CorA-lik...		Lus10004605 [exp]	9.0	0.9040
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	9.8	0.9420
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10011783 [exp]	14.5	0.9293
AT5G43830			Aluminium induced protein with...		Lus10006624 [exp]	14.7	0.9149
AT3G53250			SAUR-like auxin-responsive pro...		Lus10009219 [exp]	15.0	0.9290
AT5G37290			ARM repeat superfamily protein...		Lus10013386 [exp]	15.3	0.9277
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030460 [exp]	15.6	0.9268

Compare expression of checked genes

Lus10027409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.