Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51970 613 / 0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) AT5G63620 117 / 1e-29 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) AT4G22110 94 / 3e-21 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 91 / 4e-20 GroES-like zinc-binding dehydrogenase family protein (.1) AT1G64710 90 / 6e-20 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G43940 89 / 1e-19 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G42250 89 / 2e-19 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G77120 89 / 2e-19 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT1G22440 87 / 6e-19 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22430 86 / 1e-18 GroES-like zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031659 [exp] 691 / 0 AT5G51970 622 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10031660 [exp] 566 / 0 AT5G51970 582 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10027409 [exp] 551 / 0 AT5G51970 567 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10039625 [exp] 100 / 2e-23 AT5G63620 655 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10029549 [exp] 100 / 4e-23 AT5G63620 653 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10004785 [exp] 87 / 6e-19 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10042787 [exp] 84 / 7e-18 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029759 [exp] 84 / 1e-17 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10010506 [exp] 83 / 1e-17 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134900 [exp] 633 / 0 AT5G51970 651 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Potri.012G135000 [exp] 563 / 0 AT5G51970 558 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Potri.T010600 [exp] 111 / 3e-27 AT5G63620 646 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Potri.004G138700 [exp] 104 / 8e-25 AT5G63620 644 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Potri.019G041500 [exp] 96 / 6e-22 AT1G22430 308 / 1e-102 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.011G152900 [exp] 96 / 7e-22 AT1G32780 545 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Potri.011G152800 [exp] 96 / 1e-21 AT1G32780 540 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Potri.018G142750 [exp] 95 / 1e-21 AT1G22430 299 / 4e-99 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.018G142700 [exp] 94 / 2e-21 AT1G22430 295 / 3e-97 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.019G041600 [exp] 94 / 3e-21 AT1G22430 300 / 3e-99 GroES-like zinc-binding dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10027410 pacid=23144452 polypeptide=Lus10027410 locus=Lus10027410.g ID=Lus10027410.BGIv1.0 annot-version=v1.0 ATGGCCGCTTGGCTAGTCGCTGTCAACACCTTAAAGATCCAGCCTTTCAAGCTGCCTTCTCTAGGACCGCATGATGTAAGGATAAAGATGAAAGCTGTGG GCATTTGCGGCAGCGATGTTCACTACCTCAAGACATTGAGATGCGCACATTTTGTGGTGGAAGAGCCAATGGTGATTGGCCACGAATGTGCCGGAATTGT GGCAGAGATCGGAAGCGAGGTCAAACACCTAGTTCGCGGTGATCGTGTCGCGATTGAGCCAGGGATCAGCTGCTGGAGATGTAGCTATTGCAAAGAAGGC AGCTACAATCTATGCCCCGAGATGAAGTTCTTTGCAACTCCACCTGTTCACGGCTCTCTCGCCAACCAGGTGGTGCATCCTGCAGACCTTTGTTTCAAGC TGCCTGATAATGTGACCTTGGAGGAAGGAGCAATGTGCGAGCCATTGAGTGTCGGGGTCCACGCATGTCGTCGAGCCAATGTGGGCCCCGAGACCACCGT GTTGATCATGGGAGCCGGGCCAATAGGGCTCGTGGCGTTGCTGGCTGCTCGTGCTTTCGGATCGCCAAGGGTTGTGATCGTGGATGTGGACGAGTATCGT CTGTCTGTCGCGAAAGACCTTGGTGCCAACGAGACCATAAAAGTATCGACGAATGTTGAGGATGTTGATGCTGAAGTGGAGCTTATACAGAAAGCCATGG GAGGAGAAGGCATAGACATCACCTTGGACTGTGCGGGATTCAACAAAACAATGACGACGGCTCTGAAAGCGACGAGGCCAGGTGGCAAAGTGTGCCTTGT TGGAATGGGACACAATGAGATGACAGTGCCATTAACTCCAGCAGCTGCAAGAGAAGTGGATGTGGTGGGTGTTTTCAGGTACAAGAACACATGGCCATTG TGCATAGAGTTCTTGAGGAGTGGGAAGATAGATGTGAAGCCATTGATAACACATAGGTTTGGGTTTACACAGAAGGAGGTTGAAGATGCTTTCGAGACCA GCGCTCGTGGTGGTTCGGCCATTAAAGTCATGTTTAATCTCTGA
AA sequence Show only first row Show all	>Lus10027410 pacid=23144452 polypeptide=Lus10027410 locus=Lus10027410.g ID=Lus10027410.BGIv1.0 annot-version=v1.0 MAAWLVAVNTLKIQPFKLPSLGPHDVRIKMKAVGICGSDVHYLKTLRCAHFVVEEPMVIGHECAGIVAEIGSEVKHLVRGDRVAIEPGISCWRCSYCKEG SYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVTLEEGAMCEPLSVGVHACRRANVGPETTVLIMGAGPIGLVALLAARAFGSPRVVIVDVDEYR LSVAKDLGANETIKVSTNVEDVDAEVELIQKAMGGEGIDITLDCAGFNKTMTTALKATRPGGKVCLVGMGHNEMTVPLTPAAAREVDVVGVFRYKNTWPL CIEFLRSGKIDVKPLITHRFGFTQKEVEDAFETSARGGSAIKVMFNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51970			GroES-like zinc-binding alcoho...		Lus10027410 [exp]	0	1
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10016017 [exp]	7.4	0.7721
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10024887 [exp]	8.5	0.8624
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10029155 [exp]	8.7	0.8241
AT5G03905			Iron-sulphur cluster biosynthe...		Lus10022714 [exp]	16.2	0.7579
AT2G36130			Cyclophilin-like peptidyl-prol...		Lus10017010 [exp]	19.9	0.8194
AT4G08580			microfibrillar-associated prot...		Lus10020321 [exp]	21.6	0.7963
AT1G64385			unknown protein		Lus10032376 [exp]	23.6	0.8344
AT3G30380			alpha/beta-Hydrolases superfam...		Lus10035148 [exp]	23.8	0.7401
AT2G33220			GRIM-19 protein (.1)		Lus10023693 [exp]	31.6	0.7945
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10027158 [exp]	31.6	0.8028

Compare expression of checked genes

Lus10027410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.