Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16560 384 / 1e-133 Per1-like family protein (.1.2.3.4) AT5G62130 363 / 2e-125 Per1-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015006 [exp] 513 / 0 AT1G16560 419 / 2e-147 Per1-like family protein (.1.2.3.4) Lus10038885 [exp] 512 / 0 AT1G16560 417 / 2e-146 Per1-like family protein (.1.2.3.4) Lus10031658 [exp] 508 / 0 AT5G62130 328 / 3e-111 Per1-like family protein (.1.2) Lus10031187 [exp] 393 / 4e-137 AT1G16560 495 / 2e-177 Per1-like family protein (.1.2.3.4) Lus10031765 [exp] 395 / 5e-132 AT1G16560 496 / 2e-171 Per1-like family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134300 [exp] 454 / 6e-161 AT1G16560 466 / 8e-166 Per1-like family protein (.1.2.3.4) Potri.015G136600 [exp] 435 / 1e-153 AT1G16560 477 / 2e-170 Per1-like family protein (.1.2.3.4) Potri.007G065800 [exp] 429 / 4e-151 AT1G16560 538 / 0.0 Per1-like family protein (.1.2.3.4) Potri.002G177300 [exp] 0 / 1 AT1G16560 0 / 1 Per1-like family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF04080 [flax] [poplar] Per1 Per1-like family
Representative CDS sequence Show only first row Show all	>Lus10027411 pacid=23144519 polypeptide=Lus10027411 locus=Lus10027411.g ID=Lus10027411.BGIv1.0 annot-version=v1.0 ATGAACTGGGTCGCGCTTCTCGTGGTGGTTGTGTGTTTAGTTCGCCGGCTTGACGCCAGCGACGGTGAATCCGATCCGATTTACAGGAGGTGTGTAGAGG AGTGCCAGAGAACAGGATGTGTGGGAAACAACTGCTTCCAGCACCGCAAATTATCTTCCTCTTCCGATGGGAAACCAATTGATGGAGCCTGGTATCACCA CGAGCAGCTTTATCAGCGGTGGAAGCGATGGGATTGCCTGAATGATTGTAAGTACCATTGCATGATTGCCAGAGAAGACGAAAGGTTGGAACTTGGTCAC AGTCCATCCAAGTACCATGGCAGGTGGCCCTTCCACCGTCTCTATGGAATCCAGGAACCAGTTTCTGTGGCTCTGGCTGCTCTTATTCTTGCCATTCAAT TTCATGGCTGGCTATCGTTTTTTATTCTTGTGTACTACAAATTGCCGCTGAGGCCGAATAGTAGAAAGACTTACTATGAATACACTGGCTTGTGGCACAT CTATGGTTTCATGTCGATGAATGCCTGGCTTTGGTGTGCTGTCTTCCGCACTCAGGATGTTGAGTTTACAGAGAAACTATACTGTTCATCTCACGTGGCC TGGCTTGGCTTCACCCTTGTTCTGTCGACTCTTCGAGCTTTCAATATTCGACATGAAGCCGCGAGGGTCATGGTCGCTGCACCGGTGATTGCGTTCGTTA CAACACATATCTTGTACCTCAACTTGTACAACTTCGACAAAGGTTTGAACACGAAAGTAAGCTCGGTAATGACGTTACTCCAGATGATGATATGGGTCGT TTGGGTTGGTGTATCGCGCCACCCCTCGCGATGGAAGGTGTGGGTGACGGTTCTTGTCGGAGGAAGCATCGTCATGGCATTGGAAGTGTACAACTTCCTC TCGTTGCAGAGGTATGTAGATAGTCGAGCAATGTGGCACGCGGCTGCTATTCCTCTTGGGTACATGTGGTGGAGTTTTGTTAGGGATGATGCTGAGTTTA GAACATCAAGCCAACTCAAGAAAGCAAAGTAA
AA sequence Show only first row Show all	>Lus10027411 pacid=23144519 polypeptide=Lus10027411 locus=Lus10027411.g ID=Lus10027411.BGIv1.0 annot-version=v1.0 MNWVALLVVVVCLVRRLDASDGESDPIYRRCVEECQRTGCVGNNCFQHRKLSSSSDGKPIDGAWYHHEQLYQRWKRWDCLNDCKYHCMIAREDERLELGH SPSKYHGRWPFHRLYGIQEPVSVALAALILAIQFHGWLSFFILVYYKLPLRPNSRKTYYEYTGLWHIYGFMSMNAWLWCAVFRTQDVEFTEKLYCSSHVA WLGFTLVLSTLRAFNIRHEAARVMVAAPVIAFVTTHILYLNLYNFDKGLNTKVSSVMTLLQMMIWVVWVGVSRHPSRWKVWVTVLVGGSIVMALEVYNFL SLQRYVDSRAMWHAAAIPLGYMWWSFVRDDAEFRTSSQLKKAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16560			Per1-like family protein (.1.2...		Lus10027411 [exp]	0	1
AT1G18210			Calcium-binding EF-hand family...		Lus10042008 [exp]	1.7	0.7695
AT3G60910			S-adenosyl-L-methionine-depend...		Lus10016376 [exp]	7.5	0.6641
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Lus10030226 [exp]	8.1	0.6506
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10011847 [exp]	8.7	0.7365
					Lus10019700 [exp]	16.8	0.7417
AT5G36930			Disease resistance protein (TI...		Lus10029811 [exp]	17.9	0.6211
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10000046 [exp]	26.0	0.6876
AT2G44060			Late embryogenesis abundant pr...		Lus10008337 [exp]	34.6	0.6688
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10013704 [exp]	40.8	0.6189
AT4G19230		CYP707A1	"cytochrome P450, family 707, ...		Lus10035685 [exp]	47.6	0.6407

Compare expression of checked genes

Lus10027411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.