Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52020 69 / 3e-15 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G12630 48 / 2e-07 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G51990 43 / 1e-05 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT2G36450 41 / 4e-05 AP2_ERF HRD HARDY, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031652 [exp] 164 / 9e-53 AT5G52020 150 / 5e-46 Integrase-type DNA-binding superfamily protein (.1) Lus10027413 [exp] 123 / 1e-36 AT1G12630 146 / 3e-44 Integrase-type DNA-binding superfamily protein (.1) Lus10031655 [exp] 118 / 1e-34 AT5G52020 143 / 7e-43 Integrase-type DNA-binding superfamily protein (.1) Lus10031656 [exp] 104 / 3e-29 AT5G52020 148 / 5e-45 Integrase-type DNA-binding superfamily protein (.1) Lus10017830 [exp] 65 / 2e-13 AT5G52020 137 / 7e-40 Integrase-type DNA-binding superfamily protein (.1) Lus10024492 [exp] 61 / 5e-12 AT5G52020 140 / 3e-41 Integrase-type DNA-binding superfamily protein (.1) Lus10031654 [exp] 44 / 5e-06 AT4G25490 201 / 9e-66 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10014376 [exp] 44 / 7e-06 AT2G36450 167 / 2e-52 HARDY, Integrase-type DNA-binding superfamily protein (.1) Lus10017828 [exp] 43 / 9e-06 AT4G25470 93 / 5e-24 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G121200 [exp] 75 / 6e-18 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.001G110500 [exp] 75 / 9e-18 AT5G52020 152 / 1e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.015G136300 [exp] 75 / 2e-17 AT5G52020 132 / 7e-38 Integrase-type DNA-binding superfamily protein (.1) Potri.012G134000 [exp] 65 / 2e-13 AT5G52020 123 / 5e-34 Integrase-type DNA-binding superfamily protein (.1) Potri.016G018600 [exp] 60 / 5e-12 AT2G36450 135 / 7e-40 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.006G021000 [exp] 60 / 7e-12 AT2G36450 122 / 5e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.012G134100 [exp] 48 / 2e-07 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.015G136400 [exp] 44 / 6e-06 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110800 [exp] 40 / 0.0001 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.001G110700 [exp] 39 / 0.0003 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027415 pacid=23144627 polypeptide=Lus10027415 locus=Lus10027415.g ID=Lus10027415.BGIv1.0 annot-version=v1.0 ATGGCTGCGGCAGCGTACGACGTCGCAGCGATCGCTCTCAAAGGTCCCAACACTACTCTCAACTTCCCTGAATCCTTCCGCTCTTATCCTACCCCGGCTA CCAACTCGCCCTCCGATATCCGGGCAGCTGCCCAGACAGCTGCTGCTGCTCTCATGCCTCAGAAGCCTGACCAGTTTGGACAAGCTTCGGGGTCGCGGCA GGCTGAGGATAATCATATAGACGTGGAGGACATGCTGGACATGCCAAATTTTCTGGTGTATATGGCCGGTGGGATGATGGTGAGCCCTCCAAGGATGGAT AATAAGGGGTCGTATGGGGATTCCCCGGATAATTCGGAGGGTGAGCCTCTGTGGTCGTACGACGACAAGTGA
AA sequence Show only first row Show all	>Lus10027415 pacid=23144627 polypeptide=Lus10027415 locus=Lus10027415.g ID=Lus10027415.BGIv1.0 annot-version=v1.0 MAAAAYDVAAIALKGPNTTLNFPESFRSYPTPATNSPSDIRAAAQTAAAALMPQKPDQFGQASGSRQAEDNHIDVEDMLDMPNFLVYMAGGMMVSPPRMD NKGSYGDSPDNSEGEPLWSYDDK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10027415 [exp]	0	1
AT2G15020			unknown protein		Lus10026592 [exp]	4.7	0.8647
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10031652 [exp]	5.8	0.8128
AT2G35612			unknown protein		Lus10033285 [exp]	6.0	0.8127
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10019455 [exp]	7.9	0.8070
AT3G53810			Concanavalin A-like lectin pro...		Lus10016507 [exp]	8.9	0.8384
AT4G19390			Uncharacterised protein family...		Lus10018793 [exp]	10.5	0.8192
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10026887 [exp]	18.3	0.8336
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10029740 [exp]	19.3	0.8424
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10042771 [exp]	21.5	0.8391
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10040872 [exp]	24.2	0.8211

Compare expression of checked genes

Lus10027415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.