Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23030 543 / 0 MATE efflux family protein (.1) AT5G52050 512 / 3e-178 MATE efflux family protein (.1) AT4G29140 504 / 2e-174 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT5G19700 494 / 3e-171 MATE efflux family protein (.1) AT1G58340 468 / 2e-160 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT2G38510 415 / 2e-140 MATE efflux family protein (.1) AT1G71870 397 / 6e-133 MATE efflux family protein (.1) AT5G49130 358 / 7e-118 MATE efflux family protein (.1) AT4G22790 247 / 2e-75 MATE efflux family protein (.1) AT5G52450 230 / 7e-69 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017836 [exp] 611 / 0 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10007231 [exp] 514 / 2e-178 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10012944 [exp] 460 / 3e-157 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10028230 [exp] 432 / 5e-146 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10025237 [exp] 378 / 8e-125 AT2G38510 640 / 0.0 MATE efflux family protein (.1) Lus10009788 [exp] 352 / 9e-116 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10025156 [exp] 343 / 2e-113 AT2G38510 568 / 0.0 MATE efflux family protein (.1) Lus10038987 [exp] 298 / 1e-94 AT1G71870 527 / 0.0 MATE efflux family protein (.1) Lus10007006 [exp] 248 / 2e-75 AT4G22790 549 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G133500 [exp] 685 / 0 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.015G135600 [exp] 672 / 0 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.003G121400 [exp] 649 / 0 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.002G107200 [exp] 508 / 1e-175 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.007G043100 [exp] 452 / 2e-154 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.013G115600 [exp] 405 / 2e-136 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.016G134800 [exp] 405 / 6e-136 AT2G38510 597 / 0.0 MATE efflux family protein (.1) Potri.019G086100 [exp] 401 / 8e-135 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.010G011400 [exp] 380 / 1e-126 AT5G49130 611 / 0.0 MATE efflux family protein (.1) Potri.012G051900 [exp] 261 / 2e-80 AT5G52450 644 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10027417 pacid=23144596 polypeptide=Lus10027417 locus=Lus10027417.g ID=Lus10027417.BGIv1.0 annot-version=v1.0 ATGTGCCAGCAGCAGCAGCACCAACTCTCCCTCTCCATTCAGGACGACCACCAATCTGGTCTTGAAACCGACACCAACGACGAGCAATGCTGCTGCAGCT GCAAACAAGAAGAACCCAACCACAACATTTCCACCCCATTGATCACCAAACAGGATATAATAACCAAACAACCCATCTTATCATCATCATCATCATCGCC GATCAAAGAAGCAATCTCGATATGGCGAATCGCCCTCCCGATGATCCTAACGGGTCTCCTGCTCTACTCCCGCTCGATGATCTCCATGCTCTTCCTAGGC CGGCTAGGCGAGCTCTCCCTAGCCGGAGGCTCCTTAGCAATCGGATTCGCAAACATTACCGGATACTCGATCCTCTCCGGCTTAGCCATGGGAATGGAAC CAATCTGTGGCCAAGCTTTTGGTGCCCAGCGGCATAAGCTCCTGGGAATCACACTACAACGCACAATCCTCCTCTTAATCCTAATCTCCCTCCCTATAAC CTTCCTCTGGCTCAACATGAAACGAATCCTTTTGTTCTGTGGTCAAGATCTTGACATAGCCACACAAGCTCAATCCTATCTCATGTTCTCAATCCCTGAC CTGCTAGCTCAGTCTTTCCTCCACCCGTTACGAATCTACCTAAGAACACAATCCATAACTATTCCCTTAACATTCTGCGCTACCATCTCGATCCTGCTAC ACATCCCAATCAACTTCTACTTAGTTAGTTACCTCGATTTGGGAATTAAAGGAGTCGCCTTGAGCGGCGTCTGGACCAATTTCAACCTCGTCGCTTCTCT GATCGTCTACATCGTCTTCTCCGGCGTATATAAGCAGACTTGGGGAGGATTCTCCACCGATTGCTTCAAAGAATGGAAGCCGCTCCTCGAATTGTCGATC CCCAGCTGCATCTCCGTCTGCCTCGAGTGGTGGTGGTACGAAATCATGATCCTCCTCTGCGGATTCCTCGTAAACCCTAGATCTACGATCGCTTCCATGG GGATTCTGATCCAGACCACTTCTCTGATCTACATCTTCCCATCGTCGTTAAGCTTCAGCGTGTCAACTCGAGTCGGGAACGAATTAGGCGCCAACAACCC TAAGCGGGCGAAATCCGCGGCGGTGGTGGGGCTATGCTCGAGCTTTCTGCTAGGGATTTCGGCGCTGAGCTTTGCGATTACGGTGAGGAAAGTGTGGGCG ACGATGTTCACCTCCGATGAGGAGATTCTTTCCTTGACGGCGGCGGTACTTCCGATCATCGGACTTTGTGAGCTTGGGAACTGCCCGCAGACGACGGGAT GCGGGGTTTTGAGAGGGACGGCGAGGCCGAGGATTGGGGCGAATATTAACTTGGGGTGTTTTTACTTGGTCGGAACTCCGGTAGCGGTTTGGTTAGCGTT TTGGGCGGGGTTTGATTTCGAAGGGTTGTGGGTTGGGTTGCTGGCCGCTCAGGGTTCGTGTGCGGTGACGATGTTGGTGGTTTTGGGTCGAACCGATTGG GAAGGGGAGGCTCGGAGGGCGCAGAAGCTGACCGGTGGGGCGGGTCGTCATTGTGGTGACGTGGATGATGATAATAAGAAGAGGATTAGTGATAATAATA ATAATAATAATAAAATTAACGAGGGGATCAAGGGGGCTGACGATTGTTTATATGGAGGATACTCAATTGTTTAA
AA sequence Show only first row Show all	>Lus10027417 pacid=23144596 polypeptide=Lus10027417 locus=Lus10027417.g ID=Lus10027417.BGIv1.0 annot-version=v1.0 MCQQQQHQLSLSIQDDHQSGLETDTNDEQCCCSCKQEEPNHNISTPLITKQDIITKQPILSSSSSSPIKEAISIWRIALPMILTGLLLYSRSMISMLFLG RLGELSLAGGSLAIGFANITGYSILSGLAMGMEPICGQAFGAQRHKLLGITLQRTILLLILISLPITFLWLNMKRILLFCGQDLDIATQAQSYLMFSIPD LLAQSFLHPLRIYLRTQSITIPLTFCATISILLHIPINFYLVSYLDLGIKGVALSGVWTNFNLVASLIVYIVFSGVYKQTWGGFSTDCFKEWKPLLELSI PSCISVCLEWWWYEIMILLCGFLVNPRSTIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANNPKRAKSAAVVGLCSSFLLGISALSFAITVRKVWA TMFTSDEEILSLTAAVLPIIGLCELGNCPQTTGCGVLRGTARPRIGANINLGCFYLVGTPVAVWLAFWAGFDFEGLWVGLLAAQGSCAVTMLVVLGRTDW EGEARRAQKLTGGAGRHCGDVDDDNKKRISDNNNNNNKINEGIKGADDCLYGGYSIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23030			MATE efflux family protein (.1...		Lus10027417 [exp]	0	1
AT4G24110			unknown protein		Lus10017328 [exp]	1.4	0.9421
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	2.6	0.9436
AT3G22060			Receptor-like protein kinase-r...		Lus10039698 [exp]	5.7	0.8852
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	6.6	0.9121
					Lus10021406 [exp]	7.1	0.9186
AT1G76600			unknown protein		Lus10036322 [exp]	7.2	0.8623
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10038062 [exp]	7.7	0.9057
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10010939 [exp]	8.0	0.9044
AT4G27290			S-locus lectin protein kinase ...		Lus10014813 [exp]	8.1	0.9064
AT5G51890			Peroxidase superfamily protein...		Lus10031664 [exp]	9.5	0.9031

Compare expression of checked genes

Lus10027417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.