Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52060 315 / 1e-106 ATBAG1 BCL-2-associated athanogene 1 (.1) AT5G62100 282 / 2e-94 ATBAG2 BCL-2-associated athanogene 2 (.1.2.3) AT5G07220 278 / 1e-92 ATBAG3 BCL-2-associated athanogene 3 (.1) AT3G51780 142 / 2e-40 ATBAG4 BCL-2-associated athanogene 4 (.1) AT5G14360 96 / 1e-23 Ubiquitin-like superfamily protein (.1) AT5G40630 94 / 4e-23 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005772 [exp] 495 / 8e-178 AT5G52060 304 / 2e-102 BCL-2-associated athanogene 1 (.1) Lus10015004 [exp] 372 / 2e-129 AT5G52060 333 / 4e-114 BCL-2-associated athanogene 1 (.1) Lus10038882 [exp] 369 / 3e-128 AT5G52060 327 / 1e-111 BCL-2-associated athanogene 1 (.1) Lus10023279 [exp] 192 / 5e-60 AT5G07220 196 / 4e-62 BCL-2-associated athanogene 3 (.1) Lus10006328 [exp] 191 / 3e-59 AT5G52060 194 / 2e-60 BCL-2-associated athanogene 1 (.1) Lus10029598 [exp] 187 / 1e-57 AT5G52060 195 / 8e-61 BCL-2-associated athanogene 1 (.1) Lus10005051 [exp] 154 / 2e-43 AT3G51780 221 / 1e-69 BCL-2-associated athanogene 4 (.1) Lus10027822 [exp] 151 / 4e-43 AT3G51780 221 / 4e-71 BCL-2-associated athanogene 4 (.1) Lus10003393 [exp] 100 / 1e-24 AT3G51780 180 / 5e-56 BCL-2-associated athanogene 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G135500 [exp] 397 / 1e-138 AT5G52060 303 / 2e-101 BCL-2-associated athanogene 1 (.1) Potri.012G133400 [exp] 373 / 5e-129 AT5G52060 305 / 2e-102 BCL-2-associated athanogene 1 (.1) Potri.003G121500 [exp] 244 / 2e-79 AT5G52060 243 / 1e-78 BCL-2-associated athanogene 1 (.1) Potri.001G110300 [exp] 240 / 5e-77 AT5G52060 239 / 2e-76 BCL-2-associated athanogene 1 (.1) Potri.001G358200 [exp] 197 / 1e-61 AT5G07220 207 / 9e-66 BCL-2-associated athanogene 3 (.1) Potri.001G279500 [exp] 171 / 3e-51 AT3G51780 210 / 2e-67 BCL-2-associated athanogene 4 (.1) Potri.009G074300 [exp] 166 / 1e-49 AT3G51780 196 / 4e-62 BCL-2-associated athanogene 4 (.1) Potri.016G121200 [exp] 106 / 9e-27 AT3G51780 218 / 1e-70 BCL-2-associated athanogene 4 (.1) Potri.001G339100 [exp] 97 / 5e-24 AT5G14360 166 / 6e-53 Ubiquitin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0072 [flax] [poplar] PF02179 [flax] [poplar] BAG BAG domain
Representative CDS sequence Show only first row Show all	>Lus10027420 pacid=23144470 polypeptide=Lus10027420 locus=Lus10027420.g ID=Lus10027420.BGIv1.0 annot-version=v1.0 ATGATGAGGATGAAGACTAAATCGACACCGTTCACAAACGGCGTTCCGACACCTGTCCCTGCAGAATCCGGACGAGCCGAGTGGGAGCTCCGACCCGGCG GAATGTTGGTCCAGAAGCGGAACCCGGACTCCGACCACCGGTCAATTCCTCCACCGACAATTCGGGTCCGGGTGAAGTACGGGTCAATCACCCACGAGAT TAGCATCAGCTCCCAATCCACATTCGGGGAGCTGAAGAAGATGCTGACTGGGCCGACGGGGCTTAACCACCAAGACCAGAAGCTGATTTACAAAGACAAA GAGAGGGATTCCAAGGCGTTTCTGGATATTACAGGGGTTAAAGATAAGTCAAAGATTGTTCTTGTTGAGGATCCATTGAGTCAAGAGAGGCGTTACGTTG AGATGAGGAAGAATGCCAAATTGGAAAAGGCTTCCAAGACTATTTCTGAGATTAGCTTGGAAGTCGACAGGCTTGCTGGCCGGGTGTCGGCTCTTGAATT GGTGATTGGTAAAGGAGGGAAAGTAGCAGAGAAAGATGTGCTTGGTTTGATTGAGTTGTTGATGAATGAGTTGCTGAAGCTTGACGGGATTATGGGTGAT GGTGATGTCAAATTGCAGAGGAAAATGCAGGTGAAAAGAGTACAAAAGTATGTTGAGACACTAGACATGTTAAAGGTGAAGAACTCCATGCCAAATGGAA CCCAAAAGCAAATGCATCAACACCAACATCAAACAAGGCAAGCAAATGGGCACAATAGATTAGCTCCAATTGAAGAACATCCACCTAGGTACACCGATGT AGAACAAAAACAACAACAACATCAGCATCACCAACATCAACAACCTTCGAGGAATTCAAACTCAGGACCGGTGGTCGTGACCACGCAATGGGAAACATTC GATTCAACACCACCACCATCAATATTTCCCGGGACATCAACAATGGCCACCAACAATGGACATCAACAACAGCCAAAGTTCCCATGGGAGTTCTTTGGTT GA
AA sequence Show only first row Show all	>Lus10027420 pacid=23144470 polypeptide=Lus10027420 locus=Lus10027420.g ID=Lus10027420.BGIv1.0 annot-version=v1.0 MMRMKTKSTPFTNGVPTPVPAESGRAEWELRPGGMLVQKRNPDSDHRSIPPPTIRVRVKYGSITHEISISSQSTFGELKKMLTGPTGLNHQDQKLIYKDK ERDSKAFLDITGVKDKSKIVLVEDPLSQERRYVEMRKNAKLEKASKTISEISLEVDRLAGRVSALELVIGKGGKVAEKDVLGLIELLMNELLKLDGIMGD GDVKLQRKMQVKRVQKYVETLDMLKVKNSMPNGTQKQMHQHQHQTRQANGHNRLAPIEEHPPRYTDVEQKQQQHQHHQHQQPSRNSNSGPVVVTTQWETF DSTPPPSIFPGTSTMATNNGHQQQPKFPWEFFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10027420 [exp]	0	1
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Lus10008615 [exp]	1.0	0.8993
AT2G46710			Rho GTPase activating protein ...		Lus10005998 [exp]	4.6	0.8582
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10026338 [exp]	8.2	0.8789
AT1G80690			PPPDE putative thiol peptidase...		Lus10042454 [exp]	9.5	0.8509
AT5G11710			ENTH/VHS family protein (.1)		Lus10007460 [exp]	11.1	0.8577
AT4G33625			unknown protein		Lus10020442 [exp]	11.5	0.8119
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10032579 [exp]	14.3	0.8537
AT1G05170			Galactosyltransferase family p...		Lus10015107 [exp]	14.9	0.8311
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10026495 [exp]	16.2	0.8396
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10040745 [exp]	18.0	0.8308

Compare expression of checked genes

Lus10027420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.