Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52100 418 / 8e-149 CRR1 chlororespiration reduction 1, Dihydrodipicolinate reductase, bacterial/plant (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005771 [exp] 523 / 0 AT5G52100 480 / 9e-173 chlororespiration reduction 1, Dihydrodipicolinate reductase, bacterial/plant (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G135400 [exp] 463 / 2e-166 AT5G52100 489 / 1e-176 chlororespiration reduction 1, Dihydrodipicolinate reductase, bacterial/plant (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01113 [flax] [poplar] DapB_N Dihydrodipicolinate reductase, N-terminus CL0139 [flax] [poplar] GADPH_aa-bio_dh PF05173 [flax] [poplar] DapB_C Dihydrodipicolinate reductase, C-terminus
Representative CDS sequence Show only first row Show all	>Lus10027421 pacid=23144450 polypeptide=Lus10027421 locus=Lus10027421.g ID=Lus10027421.BGIv1.0 annot-version=v1.0 ATGGAATTTCCGAAAAGCTGCCGTTTTCAGTTTACGCTTAATGGGATTTCCAGGAATGTCAAAGCAACCACCACCAGGTCTCCTGTCTCCTGCTTAGCAG TTCAACCTACTCAGAGTAATATCAAGGTTATCATAAATGGCGCAGCAAAGGAAATTGGGAGGGCGGCTGTGTTGGCAGTTACCAAAGCTAGAGGAATGGA AGTTGCCGGTGCCGTTGACAAACATTTTGTCGGCGAAGATATTGGAAAGTCCAAAGAGACGGGAGTGGTTGTCGACTTTACGGATCCTTCGACGGTTTAC GATAATGTGAAGCAGGCAACAGCGTTTGGAATGAGAAGTGTGGTGTACGTGCCTCGGATTAAAGTGGATACAGTCGGGGCATTGTCGTCATTCTGCGATA AAGCCAGCATGGGCTGTTTGGTGGCACCGACTCTTTCCATAGGGTCCATTCTCCTCCAGCAAGCAGCTATTTCAGCTTCTTTCCACTACAACAATGTAGA AATTGTGGAATCGGCAGCAGAAGCTACGGACCTTCCATCAGCTGATGCAGTCCAAATTGCAAAAAACCTCTCAAGTCTGGGGCAGATCTACAACAAGGAT GATATATCAACAGACGTCGCAGCAAGGGGCCAAGTTCTTGGTGAAGATGGGGTCAGGGTGCACAGTATGGTACTACCAGGGTTGCCATCAAGCACAGCAG TTTACTTCTCTGGCCCAGGAGAGGTATACTCTGTCAAGCATGACATAACAAGTGTCCAGAGCCTTATGCCTGGTCTTATCTTGGCTATCAGAAAGGTGAT CCGCATTAAGAATCTGGTGTATGGTCTAGAGAAATTTTTGTAA
AA sequence Show only first row Show all	>Lus10027421 pacid=23144450 polypeptide=Lus10027421 locus=Lus10027421.g ID=Lus10027421.BGIv1.0 annot-version=v1.0 MEFPKSCRFQFTLNGISRNVKATTTRSPVSCLAVQPTQSNIKVIINGAAKEIGRAAVLAVTKARGMEVAGAVDKHFVGEDIGKSKETGVVVDFTDPSTVY DNVKQATAFGMRSVVYVPRIKVDTVGALSSFCDKASMGCLVAPTLSIGSILLQQAAISASFHYNNVEIVESAAEATDLPSADAVQIAKNLSSLGQIYNKD DISTDVAARGQVLGEDGVRVHSMVLPGLPSSTAVYFSGPGEVYSVKHDITSVQSLMPGLILAIRKVIRIKNLVYGLEKFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52100		CRR1	chlororespiration reduction 1,...		Lus10027421 [exp]	0	1
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10005315 [exp]	1.4	0.9224
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031254 [exp]	4.0	0.8536
AT1G74160			unknown protein		Lus10021148 [exp]	4.9	0.8753
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10039573 [exp]	7.7	0.8627
AT4G31690	B3	REM9	Transcriptional factor B3 fami...		Lus10042406 [exp]	9.2	0.8486
AT4G09890			Protein of unknown function (D...		Lus10005802 [exp]	10.4	0.8309
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10024833 [exp]	11.0	0.8279
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039487 [exp]	14.2	0.8450
AT5G52100		CRR1	chlororespiration reduction 1,...		Lus10005771 [exp]	15.3	0.8301
AT2G32580			Protein of unknown function (D...		Lus10035349 [exp]	15.7	0.8254

Compare expression of checked genes

Lus10027421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.