Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52110 306 / 2e-104 CCB2, HCF208 HIGH CHLOROPHYLL FLUORESCENCE 208, COFACTOR ASSEMBLY OF COMPLEX C, Protein of unknown function (DUF2930) (.1), Protein of unknown function (DUF2930) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005770 [exp] 519 / 0 AT5G52110 287 / 8e-97 HIGH CHLOROPHYLL FLUORESCENCE 208, COFACTOR ASSEMBLY OF COMPLEX C, Protein of unknown function (DUF2930) (.1), Protein of unknown function (DUF2930) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G138400 [exp] 357 / 1e-124 AT5G52110 298 / 1e-101 HIGH CHLOROPHYLL FLUORESCENCE 208, COFACTOR ASSEMBLY OF COMPLEX C, Protein of unknown function (DUF2930) (.1), Protein of unknown function (DUF2930) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF11152 [flax] [poplar] CCB2_CCB4 Cofactor assembly of complex C subunit B, CCB2/CCB4
Representative CDS sequence Show only first row Show all	>Lus10027422 pacid=23144464 polypeptide=Lus10027422 locus=Lus10027422.g ID=Lus10027422.BGIv1.0 annot-version=v1.0 ATGAGCAGTCTATCAGTCGGCTCGTTGATGCAGCTGAATTGCAACAGTTTCCATCTCCCTTCCAATCGAACCAGAAGAGTCACTACTACAATCCGAGCTG AAAATTCTCAGCCGAGCAAAGATCAACAGGACCAGCTCAACGTCTCCGTTCTCCGCTTCACCTTCGGCATTCCTGGATTGGACGAGACCTACTTGCCGAG ATGGATAGGCTACGGATTCGGCTCCCTTCTTCTACTGAACCACTTCCTTGGCTCCGATTCCACCGCCACCACCGCGGCGCAGCTGAGGACAGAGGCTCTG GGGCTCTCATTGGCAGCGTTCTCTGTCTCGCTTCCTTACATCGGAAGATTTCTCAAGGGTGCGACGAGGATGGAACAAGCGACTCTTCCTGAAAGTGCTC AGCAGATATTTGTAATGTCACCTACCATATCGGATGCCGAGAAGGAGGAATTTGCTTGGGGGACTTATATCCTACTGCGTAATACAAACTCCATAGCGGT GCTGATATCAATGCAAGGAGAATTGTGTGTTCGTGGATACTGGAACGTACCGTACAGTGACTCAGCGAAAGATTCTGTCCTCGGATGGTTTCAGAGACAG GTTGAAAATATTGGTTTAGCGGATTTGAAAGACACTCTTTATTTGCAACAGGTGCCAGGATCTGATCTACGGGATATGCTGCCTGAAGGGACTCGGTCAC TGCTTATAGTGCCGGTACTTCCGTCTAGCGATCAGAGTTCTGTTGAGATGATGAATAACATAGGTTTTGTTCTGCTGGCGTCCAACTTGGAGTATGCATA TAGTGAGAAAGATAGAGCCTGGATAAAAGCAATTGCAAACAAGTTCAGAGGTGAGAGCGTGCGTTCCAAAGTCCAAACTCTGACTAATTTGTAG
AA sequence Show only first row Show all	>Lus10027422 pacid=23144464 polypeptide=Lus10027422 locus=Lus10027422.g ID=Lus10027422.BGIv1.0 annot-version=v1.0 MSSLSVGSLMQLNCNSFHLPSNRTRRVTTTIRAENSQPSKDQQDQLNVSVLRFTFGIPGLDETYLPRWIGYGFGSLLLLNHFLGSDSTATTAAQLRTEAL GLSLAAFSVSLPYIGRFLKGATRMEQATLPESAQQIFVMSPTISDAEKEEFAWGTYILLRNTNSIAVLISMQGELCVRGYWNVPYSDSAKDSVLGWFQRQ VENIGLADLKDTLYLQQVPGSDLRDMLPEGTRSLLIVPVLPSSDQSSVEMMNNIGFVLLASNLEYAYSEKDRAWIKAIANKFRGESVRSKVQTLTNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52110		CCB2, HCF208	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10027422 [exp]	0	1
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015113 [exp]	4.7	0.8452
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10040409 [exp]	8.1	0.8082
AT2G24395			chaperone protein dnaJ-related...		Lus10026979 [exp]	8.9	0.8125
					Lus10006129 [exp]	9.8	0.8340
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10025822 [exp]	11.6	0.8124
AT3G55590			Glucose-1-phosphate adenylyltr...		Lus10014608 [exp]	12.0	0.7962
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10021440 [exp]	12.6	0.8310
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10013858 [exp]	13.5	0.8151
					Lus10030127 [exp]	13.6	0.7419
AT5G38520			alpha/beta-Hydrolases superfam...		Lus10023788 [exp]	17.0	0.7725

Compare expression of checked genes

Lus10027422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.