Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61060 318 / 3e-109 ATPP2-A13 phloem protein 2-A13 (.1.2) AT5G52120 296 / 3e-100 ATPP2-A14 phloem protein 2-A14 (.1) AT1G12710 283 / 4e-95 ATPP2-A12 phloem protein 2-A12 (.1) AT1G63090 271 / 2e-90 ATPP2-A11 phloem protein 2-A11 (.1) AT3G53000 263 / 2e-87 ATPP2-A15 phloem protein 2-A15 (.1) AT1G09155 99 / 4e-24 ATPP2-B15 phloem protein 2-B15 (.1) AT2G02360 98 / 1e-23 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02240 97 / 7e-23 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G02250 96 / 2e-22 ATPP2-B2 phloem protein 2-B2 (.1) AT2G02230 93 / 2e-21 ATPP2-B1 phloem protein 2-B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005769 [exp] 543 / 0 AT3G61060 308 / 3e-105 phloem protein 2-A13 (.1.2) Lus10029593 [exp] 304 / 5e-103 AT1G12710 398 / 2e-140 phloem protein 2-A12 (.1) Lus10024494 [exp] 303 / 2e-102 AT1G12710 377 / 6e-132 phloem protein 2-A12 (.1) Lus10008642 [exp] 271 / 2e-90 AT3G53000 470 / 6e-169 phloem protein 2-A15 (.1) Lus10042713 [exp] 96 / 9e-23 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10020674 [exp] 95 / 2e-22 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10029872 [exp] 94 / 6e-22 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10020673 [exp] 87 / 2e-19 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1) Lus10029674 [exp] 85 / 8e-19 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G136200 [exp] 370 / 1e-129 AT5G52120 353 / 3e-123 phloem protein 2-A14 (.1) Potri.015G138600 [exp] 357 / 2e-124 AT5G52120 356 / 3e-124 phloem protein 2-A14 (.1) Potri.014G075800 [exp] 318 / 8e-109 AT3G61060 397 / 4e-140 phloem protein 2-A13 (.1.2) Potri.003G121900 [exp] 311 / 4e-106 AT1G12710 401 / 9e-142 phloem protein 2-A12 (.1) Potri.001G109800 [exp] 310 / 1e-105 AT1G12710 408 / 1e-144 phloem protein 2-A12 (.1) Potri.006G117600 [exp] 277 / 9e-93 AT3G53000 486 / 2e-175 phloem protein 2-A15 (.1) Potri.001G050100 [exp] 110 / 2e-28 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.005G022000 [exp] 103 / 1e-25 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.013G012600 [exp] 96 / 1e-22 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.006G267000 [exp] 87 / 3e-19 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027423 pacid=23144486 polypeptide=Lus10027423 locus=Lus10027423.g ID=Lus10027423.BGIv1.0 annot-version=v1.0 ATGGGAGCTGCGCTCTCCGACTTGCTGTACGGCGGCGGAGCTTCGTTGACTGCTGCTTCCTCCGGCGGCGGGTGTGGTGTGATAACTAGTCTCGGGGATG TGCCGGAGAGCTGCGCGGCGGAGATCCTCATGTACTTGGATGCGCCGGAGATTTGTTCGCTGGCGAGGTTAAACAGGTCATTTCGGGGCGCGTCGTCGGC GGACTTTGTGTGGGAGACGAAATTACCCTCCAACTACGGGTTTCTGGTTGAGAAAGTGTTGGGGGTAGAACGGTCAGAAAGTTTGTGCCGGAAAGAGATT TACTCCCGACTTTGCGCGCCCAATTGCTTCGGTGACGGCAATAAGATGGTTTGGCTAGAGAAGCATAGCGGCAAGAATTGTGTAATGTTGTCGTACAAAA CGATGAGAATAACAGGAATCGACGATCGGAGATATTGGACACATATTCCAGCCGACGAATCCAGATTCAAACAAATAGCGTATCTCCAGCAAACGTGGTG GTTGGAAGTAGTTGGGGAACTGGATGACTTCCAATTCCCCGTTGGCAAATACAGCCTCTTCTTCAAGCTCCAGCTCGGCAGACCCACCTCTGCAAAATCC GGCCGATGTGGCCGCCGCGTCAGCAACTCTGATTACAAAGTCCACGGATGGGACAAGAAGCCCGTCAGGTTCCTCCTCTCCACGTCCAACGGCCAGACCG CCTCCTCCGAGTGTTACTTAACGGAGCTGCACCACGGCTGGGAACACATCCTCGTGGGCGAGTTCTCGGTCGAGAATCCGAACGTCGTGACGAAGATCAA GTTCTCGATGATGCAGATCGACTGCACGCATACCAAAGGTGGGCTGTGCTTGGATTCCGTTCTTGTTTGTCCCACCGAGGTTAGGGATAGAGTAGTGAAG CAGTTCTGA
AA sequence Show only first row Show all	>Lus10027423 pacid=23144486 polypeptide=Lus10027423 locus=Lus10027423.g ID=Lus10027423.BGIv1.0 annot-version=v1.0 MGAALSDLLYGGGASLTAASSGGGCGVITSLGDVPESCAAEILMYLDAPEICSLARLNRSFRGASSADFVWETKLPSNYGFLVEKVLGVERSESLCRKEI YSRLCAPNCFGDGNKMVWLEKHSGKNCVMLSYKTMRITGIDDRRYWTHIPADESRFKQIAYLQQTWWLEVVGELDDFQFPVGKYSLFFKLQLGRPTSAKS GRCGRRVSNSDYKVHGWDKKPVRFLLSTSNGQTASSECYLTELHHGWEHILVGEFSVENPNVVTKIKFSMMQIDCTHTKGGLCLDSVLVCPTEVRDRVVK QF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61060		ATPP2-A13	phloem protein 2-A13 (.1.2)		Lus10027423 [exp]	0	1
AT3G10250			Plant protein 1589 of unknown ...		Lus10031001 [exp]	2.0	0.9522
AT3G61060		ATPP2-A13	phloem protein 2-A13 (.1.2)		Lus10005769 [exp]	4.0	0.9224
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10001809 [exp]	12.2	0.9199
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10028933 [exp]	13.6	0.9450
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10021299 [exp]	14.8	0.9386
AT5G20885			RING/U-box superfamily protein...		Lus10043353 [exp]	15.2	0.8941
AT5G32440			Ubiquitin system component Cue...		Lus10027700 [exp]	18.0	0.9004
AT1G13195			RING/U-box superfamily protein...		Lus10006253 [exp]	18.7	0.9392
AT4G32140			EamA-like transporter family (...		Lus10041032 [exp]	19.5	0.9121
AT2G20830			transferases;folic acid bindin...		Lus10039790 [exp]	20.3	0.9283

Compare expression of checked genes

Lus10027423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.