Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005768 [exp] 150 / 2e-45 AT5G52140 90 / 7e-21 RING/U-box superfamily protein (.1) Lus10002080 [exp] 59 / 4e-12 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027424 pacid=23144589 polypeptide=Lus10027424 locus=Lus10027424.g ID=Lus10027424.BGIv1.0 annot-version=v1.0 ATGGCGATGTTGGTGACAATGACGACGTTGGCAGTGATGGCTGCGTTGGTGGTGTTGGAGATGTTGGTGACGATGGCAACGTTGGAAGCAAACAAGTGTA GGGCGGCCATAGTGGTTGTGATAAGTATAGGGCTACGGCTAGGGTCTCGGGAGGGGAAAGGGTTCTCTCTTACGAGAGGTAACAAGGCAATTTCTCTCTT ACCAAAGGGACGTCACAACCCACATTTTCCTGTTGATGAAGCTTTGGCTAGGCAGTTGCAGGAGCTGGATGGGGTTTGGGATGGACAGGATGAAGAAGCT TTAGCTTTACAGCTGAGCGAGATGGAGAATTCGTTCGGAACAATGTCGTTGAGCAAAGCTCACGGAACTGCAACTCATCACGGATCAACTTCTTCTTCTG TGAATGTTCAAGCCAATTTGAGTTTGAATTTGCAGGCTGCAAATCAGGACAACATCGATGTTGATAACATGACTTATGAGGTAGCCTTTTTTCACATCTG GAAGGATATTTAG
AA sequence Show only first row Show all	>Lus10027424 pacid=23144589 polypeptide=Lus10027424 locus=Lus10027424.g ID=Lus10027424.BGIv1.0 annot-version=v1.0 MAMLVTMTTLAVMAALVVLEMLVTMATLEANKCRAAIVVVISIGLRLGSREGKGFSLTRGNKAISLLPKGRHNPHFPVDEALARQLQELDGVWDGQDEEA LALQLSEMENSFGTMSLSKAHGTATHHGSTSSSVNVQANLSLNLQAANQDNIDVDNMTYEVAFFHIWKDI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027424 [exp]	0	1
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10024031 [exp]	7.1	0.6792
					Lus10034741 [exp]	7.4	0.6412
AT1G56310			Polynucleotidyl transferase, r...		Lus10031403 [exp]	13.3	0.6761
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Lus10008916 [exp]	15.6	0.5930
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10032511 [exp]	20.7	0.6452
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10000819 [exp]	31.1	0.6331
					Lus10011286 [exp]	106.5	0.5613
AT5G35910			Polynucleotidyl transferase, r...		Lus10020293 [exp]	121.9	0.5482
AT2G28740		HIS4	histone H4 (.1)		Lus10005448 [exp]	134.0	0.5472
					Lus10013649 [exp]	135.9	0.5342

Compare expression of checked genes

Lus10027424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.