Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45570 350 / 2e-115 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G61040 332 / 6e-109 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT1G33720 331 / 4e-108 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45550 325 / 9e-106 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45560 323 / 4e-105 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45580 313 / 4e-101 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT3G52970 299 / 8e-96 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT5G07990 275 / 1e-86 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT1G33730 269 / 7e-86 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT4G22690 260 / 3e-80 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027428 [exp] 774 / 0 AT2G45560 360 / 2e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10005766 [exp] 769 / 0 AT3G61040 352 / 2e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10027429 [exp] 597 / 0 AT2G45570 351 / 6e-116 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10027426 [exp] 592 / 0 AT2G45570 334 / 2e-109 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10005767 [exp] 579 / 0 AT2G45550 338 / 1e-110 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10040353 [exp] 561 / 0 AT2G45570 350 / 1e-115 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10027430 [exp] 504 / 4e-177 AT2G45550 270 / 2e-85 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10005765 [exp] 485 / 1e-168 AT2G45550 374 / 9e-125 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027431 [exp] 475 / 2e-164 AT2G45560 379 / 1e-126 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G138900 [exp] 536 / 0 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G137200 [exp] 505 / 2e-176 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G109300 [exp] 454 / 3e-156 AT1G33720 363 / 1e-120 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G136800 [exp] 430 / 9e-147 AT2G45560 370 / 2e-123 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.012G136600 [exp] 421 / 3e-143 AT2G45560 360 / 3e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.001G025200 [exp] 384 / 5e-129 AT2G45550 322 / 2e-104 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G113900 [exp] 341 / 3e-112 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 323 / 2e-105 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 323 / 2e-105 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 310 / 4e-100 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10027425 pacid=23144513 polypeptide=Lus10027425 locus=Lus10027425.g ID=Lus10027425.BGIv1.0 annot-version=v1.0 ATGGTCATCTATCTCCTCTTATTCTTCCCACTCGCCATCTTCCTCTACATCACCACCGCCAAACCCCAGCCGCCATCACCGCCGCTCCCACCGGGGCCAA AACCATGGCCGATCATCGGCAACCTCCTCCACCTAACCAAAAAGCCACACATCTCTCTCAATTCTTTCTCCAAACTCCACGGCCCACTCATCTCCCTCCG CCTCGGCTCCCAGCTCCTTGTCGTCGCATCTTCTCCCTCCACCGCCGCCGAAATTTTAAGAACCCACGACCGCCTCCTCTCCGCTCGGTTCGTCCCCAGG GTAGTCCCTTTCTCCATCACGGAACTCGACCGTAAAGCGATCATCTGGGCGTCCAATTGCAACGAGAATTGGAAGACTTTCAGGTCCGTTTTCAAAACCC AGCTTTTCTCCGTCAAGGCCATCGAAAGTCAGGCTGCTGTCCGGGAGCAGAAGGCCGTGGAGATGGTGAACTTCATTAGAAGAAAAACAGGGGAAGAGAT CAAAATCAGCGAAGTAGTGTTCGCTACTATTTTCGATTCGCTATCAAATCTCGCCTTCTCGAGAGACTGTATCGGATTTCAGGAGACCACAACAGCCGCG AAGGTGAAATCGTTAGTTTGGAGGATGACAGAATTGGGGGCTGCTCCTAATTTGGCAGATTTTTTTCCGATCTTGGAGAAATTGGATCCTCAGGGGTTAA GAAGGGAAACTGCCCGGAGAGTCGATGAGTTCTTTTTCATTTGGAAACCTTATCTCAAGGAGCGAAGGGAAATCCGCCGGCGAGGAGATGATGGAGGAGA TTTTCTTGATGTTTTTCTCAAAAATGGATTCAACGATGATCAAATAAATTGGTTAACTCTCGAATTGTTCGTAGCTGGTTCTGATACAAACACGTCGACG ATAGAGTGGGCGATGGCAGAGCTCATGAAAAATAGAAGAGCAATGGACAAGCTACGTAACGAATTGAAAGCAGAGTTTTCGTATCATCAAAAGCCCGAAC TGAAGGAAGTCGACGTGTACCAACTTCCGTACTTAACCGCAGTGGTCAAAGAAACGTTAAGGCTCCACCCGGCCGCTCCCTTACTAGTGCCCCACCGCGC ACCCGAGACTTTGCAAGTGATGAATTACACAATCCCCAAGGGCGCAAGGGTCACCGTGAACGTGTGGGCGATCGGGCGCGATTGTTCAATTTGGGGAGAA GATGCGGCGTCGTTTAAGCCGGAGAGGTTCATGGATTCAAAGGTGGATTTTCGAGGACAGGATTTTCAGCTGCTGCCGTTCAGTGCTGGGAGGAGGATGT GTCCTGGAATGCCATTGGCTGCCCGGCAAATTCCTCTGCTTCTGGCTAATTTGGTATGGAACTTCGACTGGTGTCTGCCCAACCAGGGAAAGCAACCGGT GGAGTTGGACATGGAGGAGAAGTTCGGCATCACGTTGCAGAAGGAATCGCCGCTTGTTCTTGTGCCACGGCAGCAATGCAAGTGA
AA sequence Show only first row Show all	>Lus10027425 pacid=23144513 polypeptide=Lus10027425 locus=Lus10027425.g ID=Lus10027425.BGIv1.0 annot-version=v1.0 MVIYLLLFFPLAIFLYITTAKPQPPSPPLPPGPKPWPIIGNLLHLTKKPHISLNSFSKLHGPLISLRLGSQLLVVASSPSTAAEILRTHDRLLSARFVPR VVPFSITELDRKAIIWASNCNENWKTFRSVFKTQLFSVKAIESQAAVREQKAVEMVNFIRRKTGEEIKISEVVFATIFDSLSNLAFSRDCIGFQETTTAA KVKSLVWRMTELGAAPNLADFFPILEKLDPQGLRRETARRVDEFFFIWKPYLKERREIRRRGDDGGDFLDVFLKNGFNDDQINWLTLELFVAGSDTNTST IEWAMAELMKNRRAMDKLRNELKAEFSYHQKPELKEVDVYQLPYLTAVVKETLRLHPAAPLLVPHRAPETLQVMNYTIPKGARVTVNVWAIGRDCSIWGE DAASFKPERFMDSKVDFRGQDFQLLPFSAGRRMCPGMPLAARQIPLLLANLVWNFDWCLPNQGKQPVELDMEEKFGITLQKESPLVLVPRQQCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61040		CYP76C7	"cytochrome P450, family 76, s...		Lus10027425 [exp]	0	1
AT5G65060	MADS	FCL3, MAF3, AGL...	MADS AFFECTING FLOWERING 3, AG...		Lus10037038 [exp]	3.2	0.6583
AT3G58060			Cation efflux family protein (...		Lus10016239 [exp]	17.2	0.6318
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Lus10012753 [exp]	18.8	0.6542
AT1G67570			Protein of unknown function (D...		Lus10011371 [exp]	25.5	0.6510
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008714 [exp]	32.0	0.6385
					Lus10013609 [exp]	47.0	0.6087
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10007849 [exp]	47.6	0.6316
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10030168 [exp]	50.8	0.5841
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10023432 [exp]	51.4	0.6188
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10008054 [exp]	62.9	0.5854

Compare expression of checked genes

Lus10027425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.