Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45570 323 / 3e-105 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT2G45550 309 / 1e-99 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G33720 302 / 5e-97 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45560 298 / 2e-95 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT3G61040 295 / 3e-94 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT3G52970 288 / 1e-91 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT2G45580 281 / 8e-89 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT5G44620 258 / 6e-80 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT5G07990 255 / 1e-78 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G22710 254 / 2e-78 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005767 [exp] 696 / 0 AT2G45550 338 / 1e-110 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027429 [exp] 671 / 0 AT2G45570 351 / 6e-116 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10040353 [exp] 608 / 0 AT2G45570 350 / 1e-115 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10027425 [exp] 603 / 0 AT3G61040 352 / 1e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10005766 [exp] 599 / 0 AT3G61040 352 / 2e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10027428 [exp] 593 / 0 AT2G45560 360 / 2e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10027430 [exp] 561 / 0 AT2G45550 270 / 2e-85 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10005765 [exp] 452 / 2e-155 AT2G45550 374 / 9e-125 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027431 [exp] 446 / 5e-153 AT2G45560 379 / 1e-126 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G138900 [exp] 452 / 2e-155 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G137200 [exp] 443 / 6e-152 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G109300 [exp] 395 / 3e-133 AT1G33720 363 / 1e-120 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G136800 [exp] 388 / 1e-130 AT2G45560 370 / 2e-123 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.012G136600 [exp] 384 / 1e-128 AT2G45560 360 / 3e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.001G025200 [exp] 359 / 3e-119 AT2G45550 322 / 2e-104 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 313 / 4e-101 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G113900 [exp] 311 / 1e-100 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 298 / 1e-95 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 297 / 3e-95 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10027426 pacid=23144550 polypeptide=Lus10027426 locus=Lus10027426.g ID=Lus10027426.BGIv1.0 annot-version=v1.0 ATGGCTATCTATCTACTCCTCCTTCCACTCATTATCATCATCGTCATATTTACCACCACCTCCAAAACCCAGCCACCATCGCCGCCGCTGCCTCCGGGAC CAAAACCATGGCCAATCATCGGAAACCTCCTGCACCTAACCAAAAACTATCATATCTCCCTAGAATCCTTGTCCAAACTGTACGGCCCACTCGTCACTCT ACGCCTCGGCTCACAACTCATGATCGTTGCCTCTTCTCCTGCTGCCGCCACCGAAATCCTCAAAACACATGACCGCCTCCTCTCCGGCCGATTCCTCCCA AAAGTCTTTCCTTGGGACGGCCCGACAATGGATCGAAAGGCCATCATTTGGGCTTCCAGTTGCCACAACAACTGGAAGTCTCTCAAAACTGTTTTTAAAA CCAGGCTCTTCTCGTCAAAGGCAATGGAGTGTCAGTCCGCCGTGAGGGAGCGGAAGGCGGCGGAGATGGTCGAATTGGTCCGAACCAAAGTCGGGGAGGA AATCTACGTGGGGAAAGTAGTTTCCAAGACTGTTTTAAGTTCGCTATTCAATCTCATGTTCTCGAGAGAATGTGTCGGGTTTGAAGAGTCGCTGGTCAGG AAGCTTATGGAGTTGATAGCCGCTCCTAACGTTGTCGACGTTTTCCCTATTTTGGATAAGTTGGATCTTCAGGGCTTGCGAAGGGCATTCTTCAACAACG CCGATAAATTGTCTTCCGTTTGGAGGCCTTATGTAAATGAGAGAAGGGAAATTCTCCGGCGAGGGGGAAGAGTTGCTGCTACTGCCGACAGAACAGAGGA TTTCCTTGATGTATTTCTGGAAATTGGACTAGACGATGAACAAATCGACTGGTTGTGTCACGAGATAGCCGGGGCCGGAACGGATACCACCACCACAATC GTAGAGTGGGCGATGGCTGAGCTAATGAAAAACAAAGGAACGATGAACAAGCTCCGCGAGGAACTAAAAACAGAGTTTTCTAGCGGAAAGCCGTTGAAAG AATCTGACATCTACCACCTTCCTTACTTAGCTGCAATCGTGAAAGAAACGTTGAGGCTACACCCGACGGGTCCTTTACTAATCCCCCACCGGTCCATGGG GACTTCAGAAGTGATGAATTACACGATCCCCGAGGAGGCCTTGGTCGTCGTTAATATGTGGGCGATCTCTCGAGATTGTTCGATCTGGGGGGATGATGCG TTGTCGTTTAGGCCGGAGAGGTTCGTCGGTTCGAAGGTAGATTTTCGAGGACAAGATTTCGAGTTGTTGCCATTTGGTGCAGGGAGGAGGATGTGTCCCG GGATGCCATTGGCGGCAAGGCAAATTCCTCTGCTCTTGGCTAATTTGGTTTGGAACTTTGATTGGTGCTTGCCAGACGGAGGAGATCCAGCGGTGGAGTT GGATATGAGCGAGAAGTTTGGGCTCATTTTACACAAGGAGCGGCCTCTGGTTCTTGTTCCTCGTCCGAGTTCTATATTACAAGACTGA
AA sequence Show only first row Show all	>Lus10027426 pacid=23144550 polypeptide=Lus10027426 locus=Lus10027426.g ID=Lus10027426.BGIv1.0 annot-version=v1.0 MAIYLLLLPLIIIIVIFTTTSKTQPPSPPLPPGPKPWPIIGNLLHLTKNYHISLESLSKLYGPLVTLRLGSQLMIVASSPAAATEILKTHDRLLSGRFLP KVFPWDGPTMDRKAIIWASSCHNNWKSLKTVFKTRLFSSKAMECQSAVRERKAAEMVELVRTKVGEEIYVGKVVSKTVLSSLFNLMFSRECVGFEESLVR KLMELIAAPNVVDVFPILDKLDLQGLRRAFFNNADKLSSVWRPYVNERREILRRGGRVAATADRTEDFLDVFLEIGLDDEQIDWLCHEIAGAGTDTTTTI VEWAMAELMKNKGTMNKLREELKTEFSSGKPLKESDIYHLPYLAAIVKETLRLHPTGPLLIPHRSMGTSEVMNYTIPEEALVVVNMWAISRDCSIWGDDA LSFRPERFVGSKVDFRGQDFELLPFGAGRRMCPGMPLAARQIPLLLANLVWNFDWCLPDGGDPAVELDMSEKFGLILHKERPLVLVPRPSSILQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027426 [exp]	0	1
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10003919 [exp]	1.7	0.9795
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10035971 [exp]	2.0	0.9817
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001637 [exp]	2.2	0.9822
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032254 [exp]	5.0	0.9744
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Lus10030292 [exp]	5.5	0.9716
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10039399 [exp]	5.7	0.9751
AT2G43870			Pectin lyase-like superfamily ...		Lus10002124 [exp]	5.7	0.9716
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10032575 [exp]	5.9	0.9726
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003444 [exp]	7.3	0.9516
					Lus10032253 [exp]	7.3	0.9733

Compare expression of checked genes

Lus10027426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.