Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13080 224 / 1e-68 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26270 220 / 3e-67 CYP71B25 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) AT5G25140 218 / 9e-67 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT5G25120 218 / 1e-66 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT3G26210 216 / 1e-65 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT3G26230 214 / 5e-65 CYP71B24 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) AT3G26280 214 / 5e-65 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT5G25180 209 / 3e-63 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT1G13110 209 / 7e-63 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT5G25130 207 / 2e-62 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018263 [exp] 438 / 9e-152 AT5G25140 393 / 5e-132 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) Lus10042419 [exp] 347 / 2e-117 AT3G48280 343 / 3e-114 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10026252 [exp] 350 / 5e-113 AT5G25120 383 / 2e-123 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10002885 [exp] 330 / 1e-109 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10012767 [exp] 318 / 3e-105 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10030708 [exp] 308 / 3e-101 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10023709 [exp] 296 / 5e-98 AT5G25120 251 / 1e-78 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10013194 [exp] 297 / 9e-97 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10016601 [exp] 286 / 1e-92 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 287 / 5e-93 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 276 / 1e-88 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 270 / 1e-86 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 266 / 5e-85 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 265 / 2e-84 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 259 / 2e-82 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.011G130850 [exp] 257 / 2e-81 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 255 / 9e-81 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365300 [exp] 253 / 1e-80 AT3G26300 291 / 7e-94 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 250 / 6e-79 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10027427 pacid=23144506 polypeptide=Lus10027427 locus=Lus10027427.g ID=Lus10027427.BGIv1.0 annot-version=v1.0 ATGACGGCAAAAAATGTTGTCCTCGCTCCCTACGGCGAGTACTGGCGCCAGATGCGGAAGATCGCCGTGCTGGAGCTCCTAAGCGCGAAACGAGTCTTGT CTTTCCGTCGAGTCAGAGAGGAAGAGGTCAAACGTTTCGTTGACCGTCTTCTTCGTACTGATAAAGAGGGTCCTGTGGATTTGAGTGAGATGGTGAAGAA ATTGACGAGCTCGATGACTTCGAGGGCGGCGTTTGGTAAAGTGCACGAGTTGAGCGATGAGTTTATGATGGTCGTTGATACGATTTCGGTATTGGACAAG ATTATTGATGAACATCAATCTAAGAGAGCAAGGAGAATAGGAGGGAAAATTGATGAAGAAGCAGATAATGATGATCTTATGGATGTTCTTCTCGATATTC ACGAAAAAGCTGTCACTCTGGACTTGTTCATGGTTGGAAGTGAGACATCATCTACAGCAATATTGTGGACCATGTCAGAAATGGTCAAAAATTCGAGAGT GATGGAGATAGCACAACAAGAAGTAAGACAAGTGTTTAGCAAGGTCGGAAATGTCAAGGAGGCAAGTCTCCATAAGTTAAATTACTTAGATATGGTGATC ACAGAAGCTTTAAGGTTGCATCCTCCTGCTCCTTTACTCCTTCCCAGAGAAACTACAGAGAACGTGAAGTTTGATAATGGATACGAGGTACCAGTAAAAA CTAGAGTACTTGTGAATGTTTGGGCGATCAATCGAGATTCTCGTTATTGGACAAATGCAGAAATGTTTCATCTTGAAAGATTTTTAGATTGTTCAGTTGA CTTCAAAGGGACTGATTTTCACTTCATTCCATTCGGTGCTGGCAGAAGGATTTGTTCTGGAATTACGTATGGAATGACCATCGTTAAACTTACTTTGGCT AATTTGCTCTTTCATTTTGACTGGACACTTCCCGGAGTACTGAAATCAAAAAATGTTGATATGACAGAATCTTTTGAAGTAACGCTTATCCAAAAATATC CTTTGCGGTTAGTTCCTTCGCTCTACATTGACAATGAAGGGAAATTGGAAATAGATCAACAGACAACACAAGCTAAGTGA
AA sequence Show only first row Show all	>Lus10027427 pacid=23144506 polypeptide=Lus10027427 locus=Lus10027427.g ID=Lus10027427.BGIv1.0 annot-version=v1.0 MTAKNVVLAPYGEYWRQMRKIAVLELLSAKRVLSFRRVREEEVKRFVDRLLRTDKEGPVDLSEMVKKLTSSMTSRAAFGKVHELSDEFMMVVDTISVLDK IIDEHQSKRARRIGGKIDEEADNDDLMDVLLDIHEKAVTLDLFMVGSETSSTAILWTMSEMVKNSRVMEIAQQEVRQVFSKVGNVKEASLHKLNYLDMVI TEALRLHPPAPLLLPRETTENVKFDNGYEVPVKTRVLVNVWAINRDSRYWTNAEMFHLERFLDCSVDFKGTDFHFIPFGAGRRICSGITYGMTIVKLTLA NLLFHFDWTLPGVLKSKNVDMTESFEVTLIQKYPLRLVPSLYIDNEGKLEIDQQTTQAK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10027427 [exp]	0	1
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10004331 [exp]	2.8	0.9393
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10041055 [exp]	8.4	0.9273
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	10.8	0.9187
AT4G11290			Peroxidase superfamily protein...		Lus10027163 [exp]	12.6	0.9059
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	13.3	0.9185
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007562 [exp]	14.1	0.9055
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	14.8	0.9136
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10027251 [exp]	15.6	0.9044
AT4G30420			nodulin MtN21 /EamA-like trans...		Lus10023211 [exp]	16.9	0.8873
AT4G33590			unknown protein		Lus10001351 [exp]	17.0	0.8604

Compare expression of checked genes

Lus10027427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.