Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61040 327 / 1e-106 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45560 327 / 2e-106 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45570 324 / 2e-105 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT2G45550 318 / 2e-103 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G33720 312 / 9e-101 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45580 299 / 8e-96 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT3G52970 297 / 6e-95 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT1G33730 263 / 7e-84 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT5G07990 259 / 1e-80 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G48300 251 / 9e-78 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005766 [exp] 812 / 0 AT3G61040 352 / 2e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10027425 [exp] 751 / 0 AT3G61040 352 / 1e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10027429 [exp] 575 / 0 AT2G45570 351 / 6e-116 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10005767 [exp] 570 / 0 AT2G45550 338 / 1e-110 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027426 [exp] 564 / 0 AT2G45570 334 / 2e-109 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10040353 [exp] 535 / 0 AT2G45570 350 / 1e-115 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10027430 [exp] 494 / 5e-173 AT2G45550 270 / 2e-85 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10005765 [exp] 453 / 7e-156 AT2G45550 374 / 9e-125 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027431 [exp] 443 / 5e-152 AT2G45560 379 / 1e-126 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G138900 [exp] 509 / 3e-178 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G137200 [exp] 488 / 2e-169 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G109300 [exp] 422 / 6e-144 AT1G33720 363 / 1e-120 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G136800 [exp] 404 / 1e-136 AT2G45560 370 / 2e-123 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.012G136600 [exp] 395 / 3e-133 AT2G45560 360 / 3e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.001G025200 [exp] 363 / 9e-121 AT2G45550 322 / 2e-104 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G113900 [exp] 327 / 9e-107 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 313 / 3e-101 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 306 / 8e-99 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 290 / 1e-92 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10027428 pacid=23144600 polypeptide=Lus10027428 locus=Lus10027428.g ID=Lus10027428.BGIv1.0 annot-version=v1.0 ATGGCCATCATCTATATTCTACTCCTCCTCCTCCCACTCACCATCTTCATTTTCATCACCACCGCCAAACCCAAGTCGCCATCACCGTCGCTCCCGCCGG GGCCAAAACCATGGCCGATCATTGGCAACCTTCTCCACCTAACCAAAAAGCCACACATCTCTTTGAATTCCTTCTCCAAACTCCATGGCCCACTCATCTC CCTCCGCCTCGGCTCCCAGCTCCTTGTCGTCGCCTCATCCCCCTCTGCTGCCGCCGAAATTTTAAGAACCCACGACCGCCTCCTCTCCGCTCGATTCGTC CCCCAAGTCGTCCCTTTCCCCATCTCCGAACTGGACCGTAAAGCGATCATCTGGGCGTCTAACTGCCACGAGAATTGGAAGACCTTCAGGTCCATTTTCA AAACCCAGCTCTTCTCCGCCAATGCCGTTGAAACTCAGGCTTCCATCCGGGAGCGGAAGGCGGTGGAGATGGTGAACTTCATTAGAAGCAAAATAGGGGA AGAAATCAATGTCAGTGAAGTAGCGTTCGCTGCTGTTTTTGACTCGTTGTCGAATCTCATCTTCTCCAAAGACTGTATCGGGTTCGAGGAAACGGCGACG GCCAGGAAGGTGAAATCATTAATTTGGAGGATGATGGAATTGGGGGCGGCTCCTAATTTGGCTGATTTTTTCCCAATTCTTGAGAAATTGGATCCTCAGG GGTTAAGAAGGGAATCTGCTAAGAACATTACCGAGTTTTGTTCCGTTTGGCAGCCTTACCTCAAGCAGAGAAGAGAAACTCCCCGACATAATAAAGGAGA TTTTCTTGATGTTTTTCTCCAAAATGGACTCGACGATGATCAAATCAATTGGTTAAATCTCGAATTGTTCGTAGCAGGGACTGATACGAACACTACCACA ATAGAGTGGGCGATGACAGAGCTGATGAAAAACATAAGAGAAATGGACAAGCTACATAATGAACTAAAAACAAAGTTTGCTTCGAATGATCAAAAGCCAT ATGTACTAAAAGAAGCTGACGTGTACCAACTTCCGTACTTAACCGCAGTGATCAAAGAAACGTTGAGGCTCCACCCGCCGGCTCCCTTACTAGTGCCCCA CCGCGCACCAGAGACTTTGCAAGTGATGAATTACACGATCCCTAAGGGTGCAAGGGTTACTGTGAACATATGGTCGATCGGGCGCGATTGTTCAATTTGG GGTGACGATGCTGCCTCATTTAAGCCGGAGAGGTTCATGGGTTCGAATGTGGATTTTCGCGGACAGGATTTTGAGTTGTTGCCGTTCAGTGCGGGAAGGA GGATGTGTCCTGGAATGCCGTTGGCAGCTAGGCAGATTCCTCTGCTTTTGGCTAATCTGGTTTGGAACTTCGACTGGTGTTTGCCCAACAAGACGGAGTT GGACATGGAAGAGAAGTTCGGAATCACGTTGCAGAAGGAATCACCGCTGGTTCTTGTTCCTAGACGGCTGAGTTCGTTATCGGAGTGA
AA sequence Show only first row Show all	>Lus10027428 pacid=23144600 polypeptide=Lus10027428 locus=Lus10027428.g ID=Lus10027428.BGIv1.0 annot-version=v1.0 MAIIYILLLLLPLTIFIFITTAKPKSPSPSLPPGPKPWPIIGNLLHLTKKPHISLNSFSKLHGPLISLRLGSQLLVVASSPSAAAEILRTHDRLLSARFV PQVVPFPISELDRKAIIWASNCHENWKTFRSIFKTQLFSANAVETQASIRERKAVEMVNFIRSKIGEEINVSEVAFAAVFDSLSNLIFSKDCIGFEETAT ARKVKSLIWRMMELGAAPNLADFFPILEKLDPQGLRRESAKNITEFCSVWQPYLKQRRETPRHNKGDFLDVFLQNGLDDDQINWLNLELFVAGTDTNTTT IEWAMTELMKNIREMDKLHNELKTKFASNDQKPYVLKEADVYQLPYLTAVIKETLRLHPPAPLLVPHRAPETLQVMNYTIPKGARVTVNIWSIGRDCSIW GDDAASFKPERFMGSNVDFRGQDFELLPFSAGRRMCPGMPLAARQIPLLLANLVWNFDWCLPNKTELDMEEKFGITLQKESPLVLVPRRLSSLSE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Lus10027428 [exp]	0	1
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10002421 [exp]	2.2	0.9591
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Lus10018764 [exp]	2.4	0.9460
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10030515 [exp]	2.8	0.9531
AT5G18030			SAUR-like auxin-responsive pro...		Lus10027317 [exp]	5.7	0.9405
AT5G23160			unknown protein		Lus10013437 [exp]	7.4	0.9316
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10008622 [exp]	7.7	0.8397
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030518 [exp]	8.5	0.9148
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039487 [exp]	11.0	0.9022
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009959 [exp]	11.0	0.9158
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10024853 [exp]	13.4	0.8787

Compare expression of checked genes

Lus10027428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.