Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45570 330 / 1e-107 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT2G45560 314 / 2e-101 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT1G33720 303 / 3e-97 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45550 300 / 4e-96 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT3G52970 297 / 5e-95 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT3G61040 291 / 1e-92 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45580 288 / 2e-91 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT5G44620 267 / 3e-83 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G22710 258 / 7e-80 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 256 / 2e-78 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040353 [exp] 739 / 0 AT2G45570 350 / 1e-115 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10005767 [exp] 661 / 0 AT2G45550 338 / 1e-110 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027426 [exp] 659 / 0 AT2G45570 334 / 2e-109 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10027425 [exp] 595 / 0 AT3G61040 352 / 1e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10005766 [exp] 588 / 0 AT3G61040 352 / 2e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10027428 [exp] 587 / 0 AT2G45560 360 / 2e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10027430 [exp] 531 / 0 AT2G45550 270 / 2e-85 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10005765 [exp] 452 / 1e-155 AT2G45550 374 / 9e-125 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027431 [exp] 440 / 9e-151 AT2G45560 379 / 1e-126 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G138900 [exp] 442 / 1e-151 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G137200 [exp] 436 / 4e-149 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G109300 [exp] 373 / 2e-124 AT1G33720 363 / 1e-120 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G136800 [exp] 369 / 6e-123 AT2G45560 370 / 2e-123 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.012G136600 [exp] 364 / 6e-121 AT2G45560 360 / 3e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.001G025200 [exp] 345 / 8e-114 AT2G45550 322 / 2e-104 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G113900 [exp] 324 / 1e-105 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 311 / 1e-100 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 300 / 2e-96 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 300 / 3e-96 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10027429 pacid=23144494 polypeptide=Lus10027429 locus=Lus10027429.g ID=Lus10027429.BGIv1.0 annot-version=v1.0 ATGGCCATCTATCTACTCCTCCTTCCACTCATCTTCATCATCGTCATCTTCACCGCCTCCAAAACCAGGCGACAATCGCCGCCGTTGCCGCCGGGACCAA AACCATGGCCAATAATCGGGAACCTCCTAGACGTAACCAAAAACCCACACGTCTACCTCCAATCCTTGTCCAAACTCTACGGCCCACTCGTATCCCTACG CCTCGGCTCCCAGCTCATAATCGTCGCCTCTTCTCCCGCCGTTGCCGCCGAAATCCTCAAAACCCACGACCGCCTCCTCTCTGCCCGATTCATCCAAAAC GCGCTCCGTTGCGACGACCTGGATCGGAAGGCCCTCATTTGGGCTTCCAATTGCCGCGACGGTACTAACTGGAAGACCCTCAGAACCGTTTTCAAAACGA GGCTCTTCTCCTCCAAGTCAATCGAGTCTCAGTCCGCCGTCAGGGAGCGGAAAGCGGCGGAGATGGTGGATTTCTTCCGGAGCAGAGTTGGGAAGGAAAT CAACGTAGGGAAAGTAATTTACATCACTGTTTTGAATTCGCTCTTCAATCTCATGTTCTCTAGAGATTGCGTTGTTGGGATTGAAGAGACGGAAATCAAT TATGTGATGAGGAAGTTGATGGAGACGGTGGCAGCTCCTAATGTAGCCGATTTTTTTCCGATTTTGGAGAAGTTTGATCCGCAGGGCTTGAGAAGGGAAT ACTTGAGCTGCCTCAAGAAATTGTCTTCCATTTGGAAGCCTTACGTCAATGAGAGAAGAGAAATTCTCCGGCGAGGGGAGCGAACCGATGTAGCCGATGG AGCAGAGGATTTTCTTGATGTCTTTCTGGAAATTGGACTAGACGATGAACAAATCGATTGGTTGGGTCACGAATTAACTGGAGCGGGAACTGATACTACC TCGGTAACTACAGAGTGGGCGATGGCAGAGCTGATAAAAAACAAAGAACCAATGAACAAGCTCCGCGAGGAACTGAAAACAGAGTTTTCGAGTGGAAAGC CGTTGAAGGAATCTGACATCTATCAGCTCCCTTACTTAACTGCTATCGTGAAAGAAACGTTAAGGCTACACATGCCGGCTCCTCTACTATTGCCCCACCG GGCGCCACAGACTTTAGAAGTGATGAATTACACAATTCCGGAGGGGGCACGAGTTGCCATCAACGCATGGGCGATCGCTCGGGATTGTTCAATTTGGGGG GACGATGCGGAGTCATTTAAGCCGGAGAGGTTCCTGGATTCAAAGGTAGATTTTCGAGGGAAGGATTTTGAGTTGTTGCCGTTCAGTGCAGGGAGGAGGA TGTGTCCCGGAATGCCGTCGGCGGCAAGGCAGATTCCTCTGCTTCTGGCTAATTTGATTTGGAGCTTCGATTGGTGCTTGCCCGATGGAGAGGGCTCGAC AGCTGAGATGGATATGAAGGTTAGTCCCGGACTCTCTGTTCAGAAGGAGCGGCCTTTGGTCCTTGTTCCTCGGCCTAGTTCGATATTGCAAGACTTACTA GTAAATACATGA
AA sequence Show only first row Show all	>Lus10027429 pacid=23144494 polypeptide=Lus10027429 locus=Lus10027429.g ID=Lus10027429.BGIv1.0 annot-version=v1.0 MAIYLLLLPLIFIIVIFTASKTRRQSPPLPPGPKPWPIIGNLLDVTKNPHVYLQSLSKLYGPLVSLRLGSQLIIVASSPAVAAEILKTHDRLLSARFIQN ALRCDDLDRKALIWASNCRDGTNWKTLRTVFKTRLFSSKSIESQSAVRERKAAEMVDFFRSRVGKEINVGKVIYITVLNSLFNLMFSRDCVVGIEETEIN YVMRKLMETVAAPNVADFFPILEKFDPQGLRREYLSCLKKLSSIWKPYVNERREILRRGERTDVADGAEDFLDVFLEIGLDDEQIDWLGHELTGAGTDTT SVTTEWAMAELIKNKEPMNKLREELKTEFSSGKPLKESDIYQLPYLTAIVKETLRLHMPAPLLLPHRAPQTLEVMNYTIPEGARVAINAWAIARDCSIWG DDAESFKPERFLDSKVDFRGKDFELLPFSAGRRMCPGMPSAARQIPLLLANLIWSFDWCLPDGEGSTAEMDMKVSPGLSVQKERPLVLVPRPSSILQDLL VNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027429 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10011657 [exp]	1.7	0.9208
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Lus10012531 [exp]	3.9	0.9155
AT3G13620			Amino acid permease family pro...		Lus10039180 [exp]	4.0	0.8858
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10002917 [exp]	7.7	0.9045
AT2G37130			Peroxidase superfamily protein...		Lus10015074 [exp]	8.4	0.9171
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Lus10018667 [exp]	13.8	0.9068
AT4G08320		TPR8	tetratricopeptide repeat 8, Te...		Lus10018179 [exp]	16.6	0.8614
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10024386 [exp]	18.6	0.8874
AT2G20080			unknown protein		Lus10012982 [exp]	19.2	0.8958
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10039599 [exp]	19.2	0.9136

Compare expression of checked genes

Lus10027429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.