Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45570 228 / 3e-69 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT2G45550 226 / 2e-68 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G33720 213 / 8e-64 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45560 211 / 5e-63 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT3G61040 204 / 2e-60 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45580 198 / 4e-58 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT5G07990 179 / 5e-51 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G22710 179 / 6e-51 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT3G52970 177 / 3e-50 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT4G22690 177 / 9e-50 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005767 [exp] 629 / 0 AT2G45550 338 / 1e-110 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027426 [exp] 528 / 0 AT2G45570 334 / 2e-109 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10027429 [exp] 518 / 0 AT2G45570 351 / 6e-116 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10040353 [exp] 506 / 6e-178 AT2G45570 350 / 1e-115 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10005766 [exp] 480 / 1e-167 AT3G61040 352 / 2e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10027428 [exp] 476 / 4e-166 AT2G45560 360 / 2e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10027425 [exp] 472 / 2e-164 AT3G61040 352 / 1e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10005765 [exp] 321 / 3e-105 AT2G45550 374 / 9e-125 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027431 [exp] 298 / 2e-96 AT2G45560 379 / 1e-126 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G138900 [exp] 347 / 2e-115 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G137200 [exp] 329 / 2e-108 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.012G136800 [exp] 290 / 2e-93 AT2G45560 370 / 2e-123 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.001G109300 [exp] 286 / 8e-92 AT1G33720 363 / 1e-120 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G136600 [exp] 285 / 2e-91 AT2G45560 360 / 3e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.001G025200 [exp] 271 / 7e-86 AT2G45550 322 / 2e-104 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 238 / 3e-73 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 232 / 4e-71 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 231 / 1e-70 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 229 / 4e-70 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10027430 pacid=23144604 polypeptide=Lus10027430 locus=Lus10027430.g ID=Lus10027430.BGIv1.0 annot-version=v1.0 ATGGCCATTCATCTACTCATCCTTCCACTGATCATTATCATCATCGTCTTCTTCAGCGCCATTTCCAAAACCAGGCCACTATCGCCGCCGCTGCCCCCGG GACCAAAACCGTGGCCAATCATCGGAAACCTCCTACACCTAACCCAAAATAACCATCACGTCTCCCTCCAATCCTTCTCCAAACTGTACGGCCCACTCAT CTCCCTACGCCTCGGCTCACAGACCCTGATCGTCGCCTCTTCTCCCGCCGCCGCTATCGAAATCCTCAGAACACACGATCACATCCTCTCCGGCCGATTC GTCCCGAAAGCTATCACTTTCAACACCCCCGAATTAGATCGTAAGACCATCATGTGGGCTTCAAGTTGCCACGACAATTGGAAGACCTTCCGAACCGTTT TCAAAACCAGGCTCTTCTCCTCAAAGGCAATGGAGTCTCAGTCCGCCGTGAGGGAGCAGAAGACGAAGGAGATGGTGGATTTCGTCCGAAGTAGAGTCGG GGAGGAAATTGACGTAGGGAAAGTAGTTTCCGCTTTTGTGTTGAGTTCTCTGTTCAAACTCATGTTCTCGATAGAATGCGTCGGGTTTGAAGCGACAAAA GAGTTGCAATCGCTGGTTAGGAAGCTTCTGGAATTGGTGGCGGCTCCTAATGTCGCCGACGTTTTCCCGATTTTGGAGAATTTGGACCCTCAGGGGTTGA GAAGGGCAACCTTGAGAATTAGCAAGGAGTTGTCTTCCGTTTGGAAGCCTTACGTGCATGAGAGAAGAGAAAGTCTCCAGCGAGGGGACCGGGCCGCCGC CGCTGCCGCCGATGGAGGAGAGGATTTTTTAGATGTCTTTTTGGAAATTGGACTAGACGATGAACAAATTGATTGGTTGGGTCAGGACTTACTTGTCGGC GGAACGGATACGATTACGGCAACCATGGAATGGGCGATGGCAGAGCTGATGAGAAACAAAGGAGCAATGAATAAGCTACGGGAGGAATTGAAAACGGAGT TTTCAAATGGAAGGCCATTGAAGGAATCTGACATCTATCGTCTCCCTTACTTGACTGCAGTCGTGAAAGAAACGTTGAGGCTATATCCGGCAGCTCCTTT ACTAGCGCCGCACCGGGCGCTACAGACTTTACAAGTGATGAATTACACGATCCCAGAAGGGGCCTTAGTTGGCGTCAACGTATGGGCGATTGCGCGGGAT TGTTCAATATGGGGGGATGATGCGGAGTCGTTTAATCCGGAGAGGTTTGTGGGTTCTAAGGTGGATTTTCGAGGACAGGATTTTGAGTAG
AA sequence Show only first row Show all	>Lus10027430 pacid=23144604 polypeptide=Lus10027430 locus=Lus10027430.g ID=Lus10027430.BGIv1.0 annot-version=v1.0 MAIHLLILPLIIIIIVFFSAISKTRPLSPPLPPGPKPWPIIGNLLHLTQNNHHVSLQSFSKLYGPLISLRLGSQTLIVASSPAAAIEILRTHDHILSGRF VPKAITFNTPELDRKTIMWASSCHDNWKTFRTVFKTRLFSSKAMESQSAVREQKTKEMVDFVRSRVGEEIDVGKVVSAFVLSSLFKLMFSIECVGFEATK ELQSLVRKLLELVAAPNVADVFPILENLDPQGLRRATLRISKELSSVWKPYVHERRESLQRGDRAAAAAADGGEDFLDVFLEIGLDDEQIDWLGQDLLVG GTDTITATMEWAMAELMRNKGAMNKLREELKTEFSNGRPLKESDIYRLPYLTAVVKETLRLYPAAPLLAPHRALQTLQVMNYTIPEGALVGVNVWAIARD CSIWGDDAESFNPERFVGSKVDFRGQDFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10027430 [exp]	0	1
					Lus10039750 [exp]	2.6	0.9721
					Lus10002152 [exp]	3.7	0.9671
AT5G03620			Subtilisin-like serine endopep...		Lus10035599 [exp]	4.0	0.7611
					Lus10019746 [exp]	4.1	0.7597
					Lus10005187 [exp]	4.6	0.9671
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10023447 [exp]	5.3	0.6803
					Lus10010117 [exp]	5.3	0.9671
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	5.9	0.9671
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040338 [exp]	6.5	0.9671
AT2G25010			Aminotransferase-like, plant m...		Lus10008761 [exp]	7.0	0.9671

Compare expression of checked genes

Lus10027430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.