Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45560 356 / 8e-118 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT3G52970 350 / 2e-115 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT2G45550 348 / 1e-114 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT3G61040 347 / 2e-114 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45570 340 / 2e-111 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT1G33720 332 / 2e-108 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT5G07990 330 / 8e-108 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G12320 301 / 1e-96 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT2G45580 299 / 1e-95 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT4G12300 298 / 2e-95 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005765 [exp] 894 / 0 AT2G45550 374 / 9e-125 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027425 [exp] 492 / 3e-171 AT3G61040 352 / 1e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10027428 [exp] 471 / 5e-163 AT2G45560 360 / 2e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10005766 [exp] 466 / 4e-161 AT3G61040 352 / 2e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10027426 [exp] 446 / 3e-153 AT2G45570 334 / 2e-109 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10027429 [exp] 441 / 3e-151 AT2G45570 351 / 6e-116 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10040353 [exp] 426 / 3e-145 AT2G45570 350 / 1e-115 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10005767 [exp] 409 / 9e-139 AT2G45550 338 / 1e-110 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10006323 [exp] 401 / 2e-135 AT1G33720 371 / 1e-123 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G138900 [exp] 547 / 0 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G137200 [exp] 539 / 0 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.012G136800 [exp] 466 / 1e-160 AT2G45560 370 / 2e-123 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.012G136600 [exp] 463 / 9e-160 AT2G45560 360 / 3e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.001G109300 [exp] 449 / 3e-154 AT1G33720 363 / 1e-120 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.001G025200 [exp] 396 / 2e-133 AT2G45550 322 / 2e-104 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 355 / 1e-117 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G113900 [exp] 340 / 1e-111 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.005G029200 [exp] 335 / 1e-109 AT3G52970 615 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.002G150100 [exp] 334 / 2e-109 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10027431 pacid=23144588 polypeptide=Lus10027431 locus=Lus10027431.g ID=Lus10027431.BGIv1.0 annot-version=v1.0 ATGGACACTTCAATGTACAATGCCTTCTTCTTCTTCTTCTTCCCACTTCTCCTTGTTCTTCTCCTTTCAATCACTAAAAGCAAGAAACTTCATCTTCCTC CGGGACCAAAACCATGGCCGATCCTCGGAAACCTCCCGCAGACACTCAATTCCAAGAGTCTCCACATCACATTTTCAACGTTCTCCCAATCCCACGGCCC ACTCATCTCCCTAAAGCTCGGCACCCAACTGGTCATCATCGCCTCATCCCCCGAGTCAGCATCCCAATTCCTCAAAACCCACGACAAAATCTTCTCGGGG CGTTCCCAATCCAAAACCAGCCCATTGGAGCTCGGTTTCTTAAACCGCGCGGCAATTGTATGGGCACCCACGTGCACCGAGGACTGGAAGTCTCTCCGCA CCCTGTGCCGGACTGAGCTCTTTTCGTTCAAAGCGATCGAGGCCCAGTCCGTCATCAAGGAAAGTAAAGTGGGAGAAATGGTAACATACCTGTTGAAAAA CGTAGCCGGGAGGGTAAACGTTGGGGAAATTGTGTTCACCACCGTTTTCAACTCCCTCTATAACGTTTTCTTCTCCCGGGATTTGTTGAGTTTAGAGGAA GGAGATGATGAAAACGGGTTGAAGAGTCATGTTAGGAAAATGATGGAGCTCGGAATTACTCCGAATGTGGCTGATTTTTACCCCTTTCTGGCGAGGTTTG ATCCTCAAGGTATGAAGAAGAAGATGATGGATGCCTTGAACAAAATGTTCTCCCTTTGGGTTTCCTACGTCAAGGAAAGAAGGGAAATCCGCAAATCAGG ATCCGACGGTGGAGATTTCACCAAGGGCGATTTTTTGGACGTTTTCCTTGACAACGAATTTGATGATGACAAGATCAATTGGTTGTTCATGGAGTTGTTA ACGGCAGGAACAGATACAACCACCACCACAATTGAATGGGCGATGGCGGAACTACTCAAGAACAGAGAAGCAATGTCGAAACTCCGCGAAGAGTTAAGCA AAGAAATCGGCGCAACAGACTTGATAACCGAATCGAACGCATCGCAACTACCGTTTCTGAATGCTTGCATGAAGGAGACGTTACGACTACACCCGCCGGT CCCATTCCTAATCCCGCATCGAGCTCAAGAAACTTGCGAGGTGATGAATTACACGATACCAAAGGATTGTCAAGTCATGGTCAACCTCTGGGCAATAGGG CGGGACCCGACGGTCTGGGTCGACCCTTTGTCGTTTAAACCGGAGCGGGTCATCGACGAGTCAACCGGTGTAGATTACAAAGGAAGGGATTTCGAGTTGA TCCCGTTCGGGTCGGGTCGGAGGATGTGCCCCGGGTTACCCTTGGCGGCTAAGCAGTTGCCGTTGATTTTGGCTTCTTTGGTGAAGGGGTTTGATTGGAG TCTTCCTGGGGGCCAGGATCCAGCCAAACTAGACATGGGGGAGAAGTTTGGACTAACGTTGCAGAAAGATGAGCCATTGGTTCTTGTGGTGGATAAGCAA CGAATGTGA
AA sequence Show only first row Show all	>Lus10027431 pacid=23144588 polypeptide=Lus10027431 locus=Lus10027431.g ID=Lus10027431.BGIv1.0 annot-version=v1.0 MDTSMYNAFFFFFFPLLLVLLLSITKSKKLHLPPGPKPWPILGNLPQTLNSKSLHITFSTFSQSHGPLISLKLGTQLVIIASSPESASQFLKTHDKIFSG RSQSKTSPLELGFLNRAAIVWAPTCTEDWKSLRTLCRTELFSFKAIEAQSVIKESKVGEMVTYLLKNVAGRVNVGEIVFTTVFNSLYNVFFSRDLLSLEE GDDENGLKSHVRKMMELGITPNVADFYPFLARFDPQGMKKKMMDALNKMFSLWVSYVKERREIRKSGSDGGDFTKGDFLDVFLDNEFDDDKINWLFMELL TAGTDTTTTTIEWAMAELLKNREAMSKLREELSKEIGATDLITESNASQLPFLNACMKETLRLHPPVPFLIPHRAQETCEVMNYTIPKDCQVMVNLWAIG RDPTVWVDPLSFKPERVIDESTGVDYKGRDFELIPFGSGRRMCPGLPLAAKQLPLILASLVKGFDWSLPGGQDPAKLDMGEKFGLTLQKDEPLVLVVDKQ RM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Lus10027431 [exp]	0	1
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10038203 [exp]	2.8	0.8508
					Lus10029619 [exp]	3.0	0.8033
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10020131 [exp]	8.7	0.7442
AT3G47570			Leucine-rich repeat protein ki...		Lus10040186 [exp]	12.0	0.8133
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10027432 [exp]	13.6	0.6868
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10016869 [exp]	15.0	0.7841
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10039378 [exp]	16.1	0.8001
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10032071 [exp]	16.1	0.7283
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10038313 [exp]	19.6	0.7903
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10015993 [exp]	20.2	0.7841

Compare expression of checked genes

Lus10027431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.