Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45750 123 / 5e-33 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 115 / 3e-30 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 114 / 7e-30 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 111 / 5e-29 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 102 / 6e-26 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 97 / 9e-24 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 89 / 3e-21 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 70 / 1e-14 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77260 60 / 7e-11 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 59 / 1e-10 Putative methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005764 [exp] 207 / 4e-64 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041366 [exp] 122 / 9e-33 AT4G00750 784 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036563 [exp] 119 / 2e-32 AT4G00750 709 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008298 [exp] 119 / 8e-32 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017357 [exp] 114 / 5e-30 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036747 [exp] 84 / 2e-19 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037180 [exp] 84 / 3e-19 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10012830 [exp] 81 / 3e-18 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10030479 [exp] 81 / 3e-18 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G137300 [exp] 158 / 9e-46 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 149 / 1e-42 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 125 / 7e-34 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 122 / 1e-32 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 120 / 4e-32 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 116 / 9e-31 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G087600 [exp] 104 / 2e-26 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 100 / 8e-25 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G123500 [exp] 98 / 4e-24 AT2G43200 677 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G094100 [exp] 95 / 3e-23 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10027432 pacid=23144482 polypeptide=Lus10027432 locus=Lus10027432.g ID=Lus10027432.BGIv1.0 annot-version=v1.0 ATGAAAAAGTTTGCTGTTGTGTTCTTATTGAGAAGGGCAGTATCTGATGGAAGTGGACTAGGGTCCAGGAGGCTACTGGATTCTGTCCAGTCCACCAATC CGGTGGAAGAAGTACTGGAAAGGTTGAGAGAGAACAAGAATGATTTGAAAGATGAACAGGACCGGAATGAAATCGTCGCTAAAAGTCTGTGCTGGAAGAA GTTCGTAGAGAAAGGTGGCATTGCAATCTGGCGGAAACCGTTCAATCACAATGACTGCAAATCCAGAACTTCACAAATTCACCATTTCTGCCCTGCTTCC CAAGACCCTGACAGAGCATGGTACACAAAATTGGAGACATGTGTAACAAACCTGCCGGAGGTGTTGGACGAGGAACAAGTGGCCGGAGGGAAGCTCCCCG ATTGGCCACAGAGATTAAACTCGGTCCTTCCCAGGATCAGCCGAGGAACGATTAAAGGCGTAACAGGCCGAGAGTTTCGAGGAGGATAA
AA sequence Show only first row Show all	>Lus10027432 pacid=23144482 polypeptide=Lus10027432 locus=Lus10027432.g ID=Lus10027432.BGIv1.0 annot-version=v1.0 MKKFAVVFLLRRAVSDGSGLGSRRLLDSVQSTNPVEEVLERLRENKNDLKDEQDRNEIVAKSLCWKKFVEKGGIAIWRKPFNHNDCKSRTSQIHHFCPAS QDPDRAWYTKLETCVTNLPEVLDEEQVAGGKLPDWPQRLNSVLPRISRGTIKGVTGREFRGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10027432 [exp]	0	1
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10040738 [exp]	2.2	0.7255
					Lus10002396 [exp]	5.5	0.7089
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Lus10027431 [exp]	13.6	0.6868
AT3G60730			Plant invertase/pectin methyle...		Lus10028536 [exp]	18.1	0.6417
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006796 [exp]	21.0	0.6209
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10036547 [exp]	24.1	0.6932
AT4G02870			unknown protein		Lus10027591 [exp]	27.7	0.6452
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10042434 [exp]	27.9	0.5797
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10007950 [exp]	29.3	0.6331
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10021719 [exp]	38.1	0.6201

Compare expression of checked genes

Lus10027432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.