Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00750 114 / 6e-31 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 110 / 1e-29 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 96 / 2e-24 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT3G10200 94 / 9e-24 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 94 / 1e-23 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 93 / 3e-23 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G18030 92 / 4e-23 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 91 / 1e-22 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 91 / 2e-22 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 89 / 5e-22 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005764 [exp] 128 / 8e-36 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036563 [exp] 114 / 3e-31 AT4G00750 709 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041366 [exp] 115 / 4e-31 AT4G00750 784 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010152 [exp] 98 / 5e-25 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042197 [exp] 98 / 5e-25 AT1G26850 706 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10017357 [exp] 98 / 5e-25 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008619 [exp] 97 / 9e-25 AT1G26850 727 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10006626 [exp] 97 / 1e-24 AT1G26850 702 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10003014 [exp] 97 / 1e-24 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G139000 [exp] 113 / 1e-30 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 113 / 2e-30 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 112 / 3e-30 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 110 / 2e-29 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 100 / 1e-25 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G094100 [exp] 99 / 2e-25 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.011G147600 [exp] 99 / 3e-25 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G147800 [exp] 97 / 9e-25 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.012G069000 [exp] 96 / 2e-24 AT1G26850 980 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.001G146400 [exp] 95 / 4e-24 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10027433 pacid=23144479 polypeptide=Lus10027433 locus=Lus10027433.g ID=Lus10027433.BGIv1.0 annot-version=v1.0 ATGAACGTTCAACTCGGTGGGTTCGCAGCCGGTTTGGTTACCGACCCAGTTTGGGTAATTAACGTGGTTCCTGTGTCCACTCGGTCATCACTTTGGGAGC CCGCTCGGAATGTATTAAAACTGCGCGGTGTGTGTTTTCGGAACAGGTGTGAAGCAATGTCGACTTATCCGAGGACTTGCGATCTGATCCACGCTGATAG AGTGTTTACCCTCTACAACAGCAGGTGCGAAATGGAGAAGATATTGCTGGAGATGGACAGGATAGTAAGGCCAAAAAGCTTACTGAACGTGGTGGAGGAG CTCCGACGACCGAAGGTGGTAGTATAA
AA sequence Show only first row Show all	>Lus10027433 pacid=23144479 polypeptide=Lus10027433 locus=Lus10027433.g ID=Lus10027433.BGIv1.0 annot-version=v1.0 MNVQLGGFAAGLVTDPVWVINVVPVSTRSSLWEPARNVLKLRGVCFRNRCEAMSTYPRTCDLIHADRVFTLYNSRCEMEKILLEMDRIVRPKSLLNVVEE LRRPKVVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10027433 [exp]	0	1
					Lus10011061 [exp]	2.0	1.0000
					Lus10009800 [exp]	3.7	1.0000
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10012337 [exp]	5.3	1.0000
					Lus10011496 [exp]	6.0	1.0000
					Lus10011848 [exp]	6.5	1.0000
AT5G46795		MSP2	microspore-specific promoter ...		Lus10004566 [exp]	6.9	1.0000
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10011845 [exp]	7.1	1.0000
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10001280 [exp]	7.5	1.0000
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10002957 [exp]	7.9	1.0000
AT3G20760			Nse4, component of Smc5/6 DNA ...		Lus10004185 [exp]	8.4	1.0000

Compare expression of checked genes

Lus10027433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.