Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12740 320 / 1e-104 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT3G44970 251 / 8e-78 Cytochrome P450 superfamily protein (.1) AT5G48000 244 / 3e-75 THAH1, THAH, CYP708A2 THALIANOL HYDROXYLASE 1, THALIANOL HYDROXYLASE, "cytochrome P450, family 708, subfamily A, polypeptide 2", cytochrome P450, family 708, subfamily A, polypeptide 2 (.1.2.3.4.5) AT1G78490 242 / 3e-74 CYP708A3 "cytochrome P450, family 708, subfamily A, polypeptide 3", cytochrome P450, family 708, subfamily A, polypeptide 3 (.1) AT1G55940 241 / 2e-72 CYP708A1 "cytochrome P450, family 708, subfamily A, polypeptide 1", cytochrome P450, family 708, subfamily A, polypeptide 1 (.1) AT3G50660 221 / 5e-66 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT1G65670 219 / 2e-65 CYP702A1 "cytochrome P450, family 702, subfamily A, polypeptide 1", cytochrome P450, family 702, subfamily A, polypeptide 1 (.1) AT4G15310 211 / 1e-62 CYP702A3 "cytochrome P450, family 702, subfamily A, polypeptide 3", cytochrome P450, family 702, subfamily A, polypeptide 3 (.1) AT5G05690 202 / 3e-59 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT4G15396 197 / 2e-57 CYP702A6 "cytochrome P450, family 702, subfamily A, polypeptide 6", cytochrome P450, family 702, subfamily A, polypeptide 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005762 [exp] 629 / 0 AT1G12740 429 / 1e-146 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10024495 [exp] 357 / 4e-119 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10017839 [exp] 328 / 1e-108 AT1G12740 640 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10042788 [exp] 211 / 2e-62 AT1G12740 397 / 1e-134 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10028628 [exp] 207 / 2e-61 AT1G12740 360 / 9e-121 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10024016 [exp] 202 / 2e-59 AT3G50660 643 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10014850 [exp] 196 / 1e-56 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10016065 [exp] 194 / 5e-56 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10040193 [exp] 193 / 1e-55 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G109100 [exp] 358 / 1e-119 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.003G122500 [exp] 352 / 6e-117 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270400 [exp] 301 / 3e-97 AT1G12740 442 / 2e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.009G064900 [exp] 300 / 1e-96 AT1G12740 477 / 5e-166 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270300 [exp] 298 / 8e-96 AT1G12740 437 / 2e-150 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.004G183800 [exp] 297 / 9e-96 AT1G12740 476 / 1e-165 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.009G143600 [exp] 297 / 2e-95 AT1G12740 475 / 3e-165 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.009G064800 [exp] 296 / 2e-95 AT1G12740 452 / 2e-156 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270800 [exp] 295 / 7e-95 AT1G12740 488 / 2e-170 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270404 [exp] 294 / 1e-94 AT1G12740 443 / 9e-153 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10027434 pacid=23144560 polypeptide=Lus10027434 locus=Lus10027434.g ID=Lus10027434.BGIv1.0 annot-version=v1.0 ATGGCATCTAATTCATCACCCAACTACTCTTTGCCCCTGCTGCTACTGATCGTTGTAGTACTTGCAGCTACAGCGGTTGACGCCCAAGGGGGTACGTCGT CATGTCCAGTCCAGCTCAGCAACCTCAACGTCTGTGCCCCGTTCGTCGTGCCAGGGGCTGCAGTTCCTAGCACCGAATGTTGCTCTGCCATCCAGTCCGT ACAGACTGGCTGCCTCTGCAGCACTCTTCAGATCACCGCCAGGCTTCCTTCCCTCTGTAGCCTCCCCACCATCTCTTGCCCTTTACCTAATTGTACTATT ACTCGAAAGACGAGCCAACACGCAAATCTCCCACCGGGAACGAGTGGCCTCCCTTTCGTCTGTGAAACTTTTCAATTCTTTGCTCCTTACACCTCCGCCG ACATCTCACCTTTCGTCAAGAAGAGAGTTCAGAGGTACGGTCCAGTGTTTCGAACAAATTTGATCAGGCAGCGGATAATAGTGCTGACGGACCCTGAGAT AAACTCGTTCGTATTCAAGAAAGACGACGAGCTATTCAAAACATGGTACACGGACAGCTTCGGCGACATCATGGGCAACGAAAGCTTCATGTCATTTCAG GGTTCTGTCCATAAGTACGTTAGGAACTTGGCCCTGAGCGAGTTTGGACCACAGAACCTGAAATATCTACTGCCTGGCCTGGAACTCTGTACCATTCATA CACTTCAATCCTCGTCCACTCAACCTAGTATCAACTTGAAAGAAGCTGTTTCTACGATGATTCATAGCTTTGCTGTTGAGAAGATGTTTAGCTTGACTGA GCCAAACCTAGTGAGGGAATTCAAACAGTCTTATGATAACTTTCTGTATGGATTTATCTCGTTTCCGATCTACTTTCCAGGGACTGCCTACTGGAAATGC ATGCAGGGAGGAGCTGGAAGGAACAGAGAAGAAGTGATGGGCAAAGATGGAAGTCCTCTAACCAAGACAAGGGCTTTAGACTTGCTCTTCATACTCACTT TCACAACTTTCGAATCGACTTCTTCTGCCATTGTCTTTGCTTTTCACTACTTGAGCCCACATCCCGCGGTACTCGAAGAACTCACTATAGAACAAAAAGC GATTTCGGAAAGGAAGAAACTGCAGGGTGAATCTGGAATCAATTGGGAAGATTATCAGTCAATGACATTCACTCACATGGTTATCAACGAAACGATACGA CTAACGAATATAGTCCCGGGAATCTTCAGGAAGGTGTTGAAGGATGTTGAAATAAAGGGATATTTGATACCAGCTGGCTGGACTATAATGGTTTATTCCA CTGCTGTTCATCTAAACCCTAAAGTTTACGATGACCCTTTAGCTTTCAATCCATGGAGATGGAAGGGGCAGAAGCTACAATTAGGATCACAAAATTTTAT GGCTTTTGGAGGGGGTGGTAAGCGCTGTGCTGGAGCAGAGTCCACTTGA
AA sequence Show only first row Show all	>Lus10027434 pacid=23144560 polypeptide=Lus10027434 locus=Lus10027434.g ID=Lus10027434.BGIv1.0 annot-version=v1.0 MASNSSPNYSLPLLLLIVVVLAATAVDAQGGTSSCPVQLSNLNVCAPFVVPGAAVPSTECCSAIQSVQTGCLCSTLQITARLPSLCSLPTISCPLPNCTI TRKTSQHANLPPGTSGLPFVCETFQFFAPYTSADISPFVKKRVQRYGPVFRTNLIRQRIIVLTDPEINSFVFKKDDELFKTWYTDSFGDIMGNESFMSFQ GSVHKYVRNLALSEFGPQNLKYLLPGLELCTIHTLQSSSTQPSINLKEAVSTMIHSFAVEKMFSLTEPNLVREFKQSYDNFLYGFISFPIYFPGTAYWKC MQGGAGRNREEVMGKDGSPLTKTRALDLLFILTFTTFESTSSAIVFAFHYLSPHPAVLEELTIEQKAISERKKLQGESGINWEDYQSMTFTHMVINETIR LTNIVPGIFRKVLKDVEIKGYLIPAGWTIMVYSTAVHLNPKVYDDPLAFNPWRWKGQKLQLGSQNFMAFGGGGKRCAGAEST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10027434 [exp]	0	1
					Lus10000861 [exp]	1.0	0.9162
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10007104 [exp]	4.2	0.8740
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10006894 [exp]	6.0	0.8477
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10005762 [exp]	9.5	0.8500
AT2G20830			transferases;folic acid bindin...		Lus10039789 [exp]	10.2	0.8267
					Lus10023200 [exp]	10.2	0.7691
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10038201 [exp]	11.8	0.8007
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10006360 [exp]	12.0	0.8460
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10018047 [exp]	13.0	0.8412
AT4G37330		CYP81D4	"cytochrome P450, family 81, s...		Lus10024817 [exp]	14.4	0.8403

Compare expression of checked genes

Lus10027434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.