Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07240 139 / 6e-37 IQD24 IQ-domain 24 (.1) AT5G62070 101 / 3e-23 IQD23 IQ-domain 23 (.1) AT1G01110 81 / 2e-16 IQD18 IQ-domain 18 (.1.2) AT4G00820 75 / 3e-14 IQD17 IQ-domain 17 (.1) AT4G23060 53 / 3e-07 IQD22 IQ-domain 22 (.1) AT1G72670 52 / 4e-07 IQD8 IQ-domain 8 (.1) AT1G17480 50 / 1e-06 IQD7 IQ-domain 7 (.1) AT4G10640 49 / 4e-06 IQD16 IQ-domain 16 (.1) AT4G14750 49 / 4e-06 IQD19 IQ-domain 19 (.1) AT3G49260 49 / 6e-06 IQD21 IQ-domain 21 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005760 [exp] 622 / 0 AT5G07240 219 / 3e-67 IQ-domain 24 (.1) Lus10017841 [exp] 74 / 6e-14 AT4G23060 258 / 2e-80 IQ-domain 22 (.1) Lus10024498 [exp] 69 / 1e-12 AT4G23060 195 / 4e-58 IQ-domain 22 (.1) Lus10008269 [exp] 60 / 2e-09 AT1G01110 317 / 8e-102 IQ-domain 18 (.1.2) Lus10010104 [exp] 53 / 3e-07 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10014870 [exp] 53 / 4e-07 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10012608 [exp] 52 / 6e-07 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10006613 [exp] 52 / 1e-06 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10021904 [exp] 50 / 4e-06 AT4G14750 314 / 2e-103 IQ-domain 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G139800 [exp] 282 / 1e-90 AT5G07240 137 / 3e-36 IQ-domain 24 (.1) Potri.015G142200 [exp] 270 / 6e-86 AT5G07240 138 / 3e-36 IQ-domain 24 (.1) Potri.001G108800 [exp] 125 / 2e-31 AT4G23060 179 / 1e-50 IQ-domain 22 (.1) Potri.003G122800 [exp] 95 / 9e-21 AT4G23060 109 / 1e-25 IQ-domain 22 (.1) Potri.002G178500 [exp] 81 / 3e-16 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.001G448100 [exp] 70 / 1e-12 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.014G104600 [exp] 59 / 5e-09 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.008G156700 [exp] 53 / 2e-07 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.018G062001 [exp] 52 / 3e-07 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.003G042700 [exp] 52 / 4e-07 AT1G72670 223 / 3e-68 IQ-domain 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10027435 pacid=23144546 polypeptide=Lus10027435 locus=Lus10027435.g ID=Lus10027435.BGIv1.0 annot-version=v1.0 ATGGGCTTTCTGCGGAGACTATTCGGATCGAAGAAACAGAGCAATTCGCACTCCAACAACAACAGGAGGTGGAGCTTCGGTAGATCTACCCCCGCACACC GGCACCCTTCGAACCACGACGATGAACAGTACGCAGACGGATTGGATGCCAATAAGCACGCCATAGCGGTAGCCGCCGCCACTGCCGCGGTCGCCGAGGG TGGGTCCTCTGGCGGGCCAGACCTCCCGGGGGGGTGGTNCGAGGTTGTCAGGCTTAGAAGTGGCGGCGGCGGTGGGAGGAGTGTTGCATCGCCGCAGGTT GCCGGGAGCCACCGCCGGTACGCTGAGGCGTTTGCCGCGGTCAGGATTCAGTCCGCATTTCGTGGCTATCTGGCTAGGAGGGCTTTGAGAGCATTGAAAG CGCTGGTCAAACTTCAAGCATTGGTTAGAGGACACATTGTTAGGAAACAATCGGCTGATATGCTCCGGCGAATGCAAACCCTTGTGCGAGTGCAGGCTCG AGCTCGTGCTAATCGAACCGTCCCCTATGATCAGCCTCTCCATTCTTCCAGCAAGTTCTCCCATTTGCGATACAGCGAAAAGCTATTCACTTTAGCACAC CAATTTTTGGCTACTTTCTACCTGCAGAGAACCCCTCAGAAGGACCGCTTGCCTAGAGTTTATAGTGCTAGTTCTAAAGTTGATGGACCATCAAATCTCA AGAGATGCAGCTCGAATTCCAACATTAGGGACGTGGCAGAGCTCGAGAAGGGAAAAACCGGTTCGAACTGGTTAGACCGATGGATGGAAGAGAGCCTGTG GACGAACCACGTTGTCGTTAGTTCTCCACAGAAGAATCATCGAACTTCTGACGACGAGAAGACTGATGACAAGATACTCGAGGTAGATACTTGGAAGCCA CACATGAAAACTTTCGATTCCCCGTCGAAGTGGTCGACAAGACCAACGAACATGATCCCGAATAATGTGTCCTCTAGAGAAGCATTGCCTAACTCTGCAT CGTCAAGGCTTGGAAGTAGCGGTCGAAAAGGACAAGGTGATGGTGGTCCATTCACACCTACAAGGAGCGAGACCTCGTGGGGATACTTCAATGGATACTC GAGCTACCCTAATTACATGGCCAACACCGAGTCATCGATAAACCGGTTTAGATCGCAGAGTGCACCGAGGCAAAGGGGGGTGGAGTTTGACAAATTGAGT TCGAGCAAGAGATCGTCGAAGGGTGTTTATGATTCGGACACTGTTTCGGAATGTGGGTTTGGTCAGCACACTGAGGTTAGGCACAAAGCTCATCCTGGAG GTGGACGTCTTAGTAGAGTAGGAAGTACCCGTTTAAGTTCATAA
AA sequence Show only first row Show all	>Lus10027435 pacid=23144546 polypeptide=Lus10027435 locus=Lus10027435.g ID=Lus10027435.BGIv1.0 annot-version=v1.0 MGFLRRLFGSKKQSNSHSNNNRRWSFGRSTPAHRHPSNHDDEQYADGLDANKHAIAVAAATAAVAEGGSSGGPDLPGGWXEVVRLRSGGGGGRSVASPQV AGSHRRYAEAFAAVRIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQSADMLRRMQTLVRVQARARANRTVPYDQPLHSSSKFSHLRYSEKLFTLAH QFLATFYLQRTPQKDRLPRVYSASSKVDGPSNLKRCSSNSNIRDVAELEKGKTGSNWLDRWMEESLWTNHVVVSSPQKNHRTSDDEKTDDKILEVDTWKP HMKTFDSPSKWSTRPTNMIPNNVSSREALPNSASSRLGSSGRKGQGDGGPFTPTRSETSWGYFNGYSSYPNYMANTESSINRFRSQSAPRQRGVEFDKLS SSKRSSKGVYDSDTVSECGFGQHTEVRHKAHPGGGRLSRVGSTRLSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62070		IQD23	IQ-domain 23 (.1)		Lus10027435 [exp]	0	1
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10042762 [exp]	3.6	0.7191
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10019772 [exp]	8.5	0.6577
					Lus10009807 [exp]	16.3	0.6328
					Lus10000458 [exp]	17.0	0.6509
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10032465 [exp]	17.3	0.6630
AT1G24095			Putative thiol-disulphide oxid...		Lus10030653 [exp]	19.1	0.5950
AT1G17665			unknown protein		Lus10003829 [exp]	19.5	0.6011
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10008900 [exp]	27.5	0.6219
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10008764 [exp]	27.9	0.5953
AT3G22530			unknown protein		Lus10000009 [exp]	29.8	0.6266

Compare expression of checked genes

Lus10027435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.