Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07250 276 / 3e-90 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT1G63120 253 / 9e-82 ATRBL2 RHOMBOID-like 2 (.1) AT2G29050 247 / 2e-78 ATRBL1 RHOMBOID-like 1 (.1.2) AT1G12750 241 / 2e-77 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT4G23070 216 / 2e-67 ATRBL7 RHOMBOID-like protein 7 (.1) AT3G53780 214 / 1e-65 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT1G52580 177 / 1e-52 ATRBL5 RHOMBOID-like protein 5 (.1) AT1G77860 140 / 6e-38 KOM KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) AT3G58460 42 / 0.0008 ATRBL15 RHOMBOID-like protein 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024497 [exp] 309 / 2e-103 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10017840 [exp] 301 / 2e-100 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10005464 [exp] 236 / 3e-74 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2) Lus10004965 [exp] 235 / 5e-74 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2) Lus10023789 [exp] 234 / 1e-73 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2) Lus10003971 [exp] 238 / 1e-71 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10003743 [exp] 134 / 2e-35 AT1G77860 333 / 1e-112 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10028036 [exp] 130 / 6e-34 AT1G77860 323 / 1e-108 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10021092 [exp] 43 / 0.0005 AT3G58460 535 / 0.0 RHOMBOID-like protein 15 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G142000 [exp] 333 / 4e-113 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.012G139600 [exp] 330 / 1e-111 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.003G122900 [exp] 304 / 9e-102 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.001G108700 [exp] 291 / 2e-96 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.009G031900 [exp] 251 / 2e-80 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2) Potri.001G241300 [exp] 250 / 5e-80 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.006G086300 [exp] 235 / 9e-74 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.002G090400 [exp] 134 / 2e-35 AT1G77860 298 / 1e-98 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Potri.006G197900 [exp] 42 / 0.0007 AT3G58460 561 / 0.0 RHOMBOID-like protein 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Lus10027436 pacid=23144521 polypeptide=Lus10027436 locus=Lus10027436.g ID=Lus10027436.BGIv1.0 annot-version=v1.0 ATGCGCGGCGGCGTTGACGTGGAATCTGGCGGAGGAGGTGCCAGGAGAGGCCTGATCAAGAGCCGTGGAGGAGAAGCGGCGGCGAACGGCTACTCATCGT CCTCGTCTGCGGCGTACTTGATCGAGGAGACGGAGGCCCAGTGGACGTCGTGGCTTGTACCTATGTTCGTAGTCGTAAACGTGGCCGTTTTCATCGTAGC CATGTACATCAACGACTGCCCCAAGCATTACCACTCGAGGGTGGAAGGAGGATGCGTTGCTAGGTTTCTCGGGAGGTTTTCGTTCGAACCCCTTAGGAAT AATCCTCTCTTCGGCCCTTCCTCCTCAACTTTGGAGAAGATGGGAGCTTTGGAGTGGGAGAAGATTGTGAAGAGACATCAAGGATGGAGGCTGTTGACTT CCATTTGGCTGCACGCTGGGATTATCCATCTCCTTGCTAATATGCTGAGCTTGGTTCTCATTGGAGTTCGTCTTGAGCAGCAATTTGGATTTGTTAGAGT TGGGATCATATATCTGGTGTCAGGATTTGGAGGGAGTGTTCTATCTTCTCTATTCCTCAAAGAAGGCATCTCAGTTGGTGCATCAGGTGCTCTATTTGGC TTACTGGGAGCCATGCTTGCTGAACTCCTTACCAATTGGACAATTTACTCCAACAAGGCAGCAGCAATGATTACTCTTCTGGTGATCATAGCAGTCAACC TGGCGATCGGGATCCTGCCACACGTCGACAATTTCTCTCACATTGGTGGGTTCCTATCCGGTTTCCTACTCGGTTTTATCCTTCTTCCTCGTCCACAGTT CGCCTGGCTGGAGCGTCGGAATCTGCCTTCTGGGGTTCGCTTCAAGTCCAAGTACAAGCCTTACCAATACGCCTTGTGGCTGGTTTCGCTGGCCCTCCTC ATTGTCGGATTTGCGGTGGCAGTGGTAATGCTGTTCAGGGGAGTGAATGGGAATGAGCATCGGGACAAAGTCATCCCACAAATTACAGAGCCTTTGACAT CGCAGTTCATGGCCATCCGACTGGCATGGTCGCTTCCTCGCGTTGGAAACTGGGTCCACTCTCCATTCATGCACACATATTCAGCCAAGACGAAAAAGAT TGCTTCACATCACTACTGCATGTCACATTATCACCCTCCTCCCGTTCTTATCTACAAAGTATGTAGCTCACCATAG
AA sequence Show only first row Show all	>Lus10027436 pacid=23144521 polypeptide=Lus10027436 locus=Lus10027436.g ID=Lus10027436.BGIv1.0 annot-version=v1.0 MRGGVDVESGGGGARRGLIKSRGGEAAANGYSSSSSAAYLIEETEAQWTSWLVPMFVVVNVAVFIVAMYINDCPKHYHSRVEGGCVARFLGRFSFEPLRN NPLFGPSSSTLEKMGALEWEKIVKRHQGWRLLTSIWLHAGIIHLLANMLSLVLIGVRLEQQFGFVRVGIIYLVSGFGGSVLSSLFLKEGISVGASGALFG LLGAMLAELLTNWTIYSNKAAAMITLLVIIAVNLAIGILPHVDNFSHIGGFLSGFLLGFILLPRPQFAWLERRNLPSGVRFKSKYKPYQYALWLVSLALL IVGFAVAVVMLFRGVNGNEHRDKVIPQITEPLTSQFMAIRLAWSLPRVGNWVHSPFMHTYSAKTKKIASHHYCMSHYHPPPVLIYKVCSSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Lus10027436 [exp]	0	1
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10015032 [exp]	2.0	0.9205
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10020913 [exp]	3.5	0.8895
AT3G26000			Ribonuclease inhibitor (.1)		Lus10006438 [exp]	3.5	0.8572
AT2G43290		MSS3	multicopy suppressors of snf4 ...		Lus10027701 [exp]	3.5	0.9021
					Lus10033310 [exp]	4.6	0.8944
AT1G13970			Protein of unknown function (D...		Lus10030425 [exp]	5.1	0.8289
AT3G20300			Protein of unknown function (D...		Lus10024308 [exp]	6.0	0.8683
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10042185 [exp]	6.3	0.8797
AT2G46550			unknown protein		Lus10023163 [exp]	7.5	0.8637
AT5G60580			RING/U-box superfamily protein...		Lus10037410 [exp]	8.3	0.8366

Compare expression of checked genes

Lus10027436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.