Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61150 95 / 8e-23 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT4G00730 86 / 2e-19 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G25530 79 / 4e-17 HD HDG6, FWA HOMEODOMAIN GLABROUS 6, FLOWERING WAGENINGEN (.1) AT5G52170 75 / 6e-16 HD HDG7 homeodomain GLABROUS 7 (.1) AT4G21750 71 / 3e-14 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G04890 67 / 4e-13 HD PDF2 protodermal factor 2 (.1) AT1G05230 66 / 9e-13 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT2G32370 59 / 2e-10 HD HDG3 homeodomain GLABROUS 3 (.1) AT1G79840 58 / 4e-10 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT1G17920 56 / 2e-09 HD HDG12 homeodomain GLABROUS 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005758 [exp] 163 / 2e-47 AT3G61150 419 / 3e-137 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10027437 [exp] 138 / 7e-38 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005759 [exp] 136 / 4e-37 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10011633 [exp] 116 / 1e-30 AT3G61150 160 / 2e-42 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10003299 [exp] 102 / 5e-28 AT4G00730 61 / 1e-11 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10005756 [exp] 91 / 2e-21 AT3G61150 283 / 3e-88 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10036567 [exp] 89 / 1e-20 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10014997 [exp] 77 / 1e-16 AT4G00730 559 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10041362 [exp] 68 / 3e-13 AT4G00730 379 / 2e-122 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G139300 [exp] 100 / 9e-25 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 94 / 3e-22 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G141800 [exp] 91 / 2e-21 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G075200 [exp] 91 / 2e-21 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.004G020400 [exp] 71 / 3e-14 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.011G025000 [exp] 69 / 7e-14 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G152000 [exp] 66 / 8e-13 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.002G230200 [exp] 66 / 2e-12 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.001G184100 [exp] 62 / 2e-11 AT1G79840 946 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Potri.003G052400 [exp] 61 / 4e-11 AT1G79840 948 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain
Representative CDS sequence Show only first row Show all	>Lus10027438 pacid=23144451 polypeptide=Lus10027438 locus=Lus10027438.g ID=Lus10027438.BGIv1.0 annot-version=v1.0 ATGAGACCACTTCCAAGTGATCATGAAGTTCCGAGCCTCGAAAAGTCGGCGTTTCTGGATTTCGCTATGGTTGCTATGAATGAGCTATTCGCCATGGTTC AAGCTGATGAGCCACTCTGGGTGAAATGCCCTCATCTTGGTGGTGATAGCGAAATGCTGAATCTTGATGAATATGCTAGAATTGCTCTACCTTCGTTTTG CGTGAAACGCAATGGCTTCGTCACCGAGGCTTCGAGGGAGACTAGTAGTGTTATGATTGACAGCGCTGCTGTTGCTGAAATGTTGATGGATTTGATATGT ATATGGATGGTGGACAACTTCTGCACTGCAGTAGTTAGTAACAGTGACGAAAAATGGGAGAAGCTCACCGTAAAAAACGTGAGCGAGGGTGTAAGGATTC TGGCAAGAAAGAGCCTCAATGGGATCGGGGAGGCCTCTGGGTTCGTGTTGGGAGCCTCGACGTCTGTATGGTTGCCTTTCTCGAGGCAGAGGTTGTTTAA TTTTCTCAACGAAAACTCGGCGAGTTGGGATATCCTGACCAAAGATGGGAAAATGGAAGAGATTGTTTAA
AA sequence Show only first row Show all	>Lus10027438 pacid=23144451 polypeptide=Lus10027438 locus=Lus10027438.g ID=Lus10027438.BGIv1.0 annot-version=v1.0 MRPLPSDHEVPSLEKSAFLDFAMVAMNELFAMVQADEPLWVKCPHLGGDSEMLNLDEYARIALPSFCVKRNGFVTEASRETSSVMIDSAAVAEMLMDLIC IWMVDNFCTAVVSNSDEKWEKLTVKNVSEGVRILARKSLNGIGEASGFVLGASTSVWLPFSRQRLFNFLNENSASWDILTKDGKMEEIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10027438 [exp]	0	1

Compare expression of checked genes

Lus10027438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.