Plant FIBer expression Database

Lus10027439 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52170 107 / 3e-28 HD HDG7 homeodomain GLABROUS 7 (.1)
AT3G61150 106 / 7e-28 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
AT4G00730 96 / 5e-24 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
AT4G04890 92 / 1e-22 HD PDF2 protodermal factor 2 (.1)
AT1G05230 90 / 6e-22 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4)
AT4G21750 83 / 2e-19 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
AT1G79840 73 / 6e-16 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
AT1G17920 69 / 8e-15 HD HDG12 homeodomain GLABROUS 12 (.1)
AT4G25530 69 / 9e-15 HD HDG6, FWA HOMEODOMAIN GLABROUS 6, FLOWERING WAGENINGEN (.1)
AT2G32370 68 / 2e-14 HD HDG3 homeodomain GLABROUS 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005758
[exp]
184 / 2e-56 AT3G61150 419 / 3e-137 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Lus10027437
[exp]
151 / 1e-43 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Lus10005759
[exp]
145 / 1e-41 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Lus10003296
[exp]
132 / 4e-41 AT3G61150 121 / 6e-33 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Lus10041361
[exp]
108 / 3e-31 AT3G61150 223 / 6e-69 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Lus10036567
[exp]
106 / 9e-28 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Lus10031933
[exp]
104 / 5e-27 AT3G61150 410 / 1e-133 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Lus10038161
[exp]
95 / 3e-25 AT1G05230 106 / 2e-26 homeodomain GLABROUS 2 (.1.2.3.4)
Lus10038876
[exp]
97 / 4e-25 AT3G61150 296 / 1e-93 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G075200
[exp]
106 / 1e-27 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Potri.002G154700
[exp]
105 / 2e-27 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Potri.015G141800
[exp]
100 / 1e-25 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Potri.014G152000
[exp]
92 / 9e-23 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4)
Potri.012G139300
[exp]
91 / 2e-22 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Potri.015G034100
[exp]
88 / 2e-21 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
Potri.012G038500
[exp]
88 / 3e-21 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
Potri.002G230200
[exp]
88 / 3e-21 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4)
Potri.004G020400
[exp]
86 / 2e-20 AT4G04890 1185 / 0.0 protodermal factor 2 (.1)
Potri.011G025000
[exp]
85 / 3e-20 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10027439 pacid=23144533 polypeptide=Lus10027439 locus=Lus10027439.g ID=Lus10027439.BGIv1.0 annot-version=v1.0
ATGACAGTACTCCAGAAATCGTGGCACGATGCTTCAGGGTCGTTGTTGGTGTACGCACCGGTGAGTGTGGCATCGATGGAGATGGTGATGAAGGGTGGAG
ACCGCACCTTTGTTGGTCTCATGCCATTCGGGTATGCTATTCTCCCATATGGGAGTCACCAACAAAACTATCCTATGGCCACTACTGAAGGTGACAGTCA
TGGTGGGATGGTCGAGGCCGGTGGATCCATCCTAACAATTGAGTTTCAAATCCTAGTGAACACCCTCCCTACGACCAACTTAACCACGGAGTCCGTGGAC
ATAGTGAACAATTTGCTCTCGTGTACTATCCAGCACATCAAGGACACCCTACAGGTGGTGACTTGA
AA sequence
>Lus10027439 pacid=23144533 polypeptide=Lus10027439 locus=Lus10027439.g ID=Lus10027439.BGIv1.0 annot-version=v1.0
MTVLQKSWHDASGSLLVYAPVSVASMEMVMKGGDRTFVGLMPFGYAILPYGSHQQNYPMATTEGDSHGGMVEAGGSILTIEFQILVNTLPTTNLTTESVD
IVNNLLSCTIQHIKDTLQVVT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G00730 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS... Lus10027439
[exp]
0 1

Lus10027439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.