Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33495 595 / 0 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 230 / 1e-70 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT1G06440 227 / 4e-70 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G79120 157 / 4e-43 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 152 / 9e-41 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 143 / 6e-38 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G21970 139 / 2e-36 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 138 / 2e-36 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 135 / 5e-35 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G71850 135 / 6e-35 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005755 [exp] 786 / 0 AT4G33495 608 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10041673 [exp] 228 / 1e-69 AT1G06440 495 / 2e-175 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10003062 [exp] 144 / 2e-38 AT2G31290 558 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10005945 [exp] 145 / 3e-38 AT4G01037 582 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10029446 [exp] 145 / 3e-38 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10016529 [exp] 142 / 1e-37 AT5G21970 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10034086 [exp] 140 / 4e-37 AT2G31290 559 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000096 [exp] 139 / 1e-36 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 138 / 4e-36 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G141700 [exp] 623 / 0 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G245100 [exp] 244 / 2e-76 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.016G030300 [exp] 237 / 4e-73 AT5G45790 466 / 8e-163 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G244900 [exp] 208 / 3e-63 AT1G06440 503 / 7e-180 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G169300 [exp] 152 / 2e-40 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.001G439100 [exp] 149 / 2e-40 AT1G79120 483 / 2e-170 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 149 / 3e-40 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G220000 [exp] 145 / 7e-39 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 144 / 3e-38 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 144 / 2e-37 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10027440 pacid=23144602 polypeptide=Lus10027440 locus=Lus10027440.g ID=Lus10027440.BGIv1.0 annot-version=v1.0 ATGGCAGCAATCCCCGCACTCCTCCTCCGCCACTTCAAATCCACGGCCACGAAACACCTCCGATATATGTCCCAATCAACCTCCATCCCCAAAAAGCAAG ACCGAATCCGCGACCATGGCTACGACAACTACATGGAGGTCCAGAAGAAAACCAGGCGAGTCCTCAAGTTCCAATCCCTTATCCTCCCTCACCACAACCA GACCATCCCGATCTCCCGCCTCGACGGCCTCTCCCGCCGATTAGGCTTCAAGCAGTTCGAAGCCGGCGCCTTCATCTTGAAGTTCCCTCACATCTTCGAA GTCTACGAGCATCCCGTCCAGCGAATCCTCTTCGTCCGCCTCACTCGCAAAGCACTGATTCAGATTCGGGAAGAGAAAGAAGCGCTCCTCGCTCAAATTC CAGAGGCAGTCGTCCGATTGAGGAAGCTGGTGATGATGTCCGGAACCGGTCGGATCCGATTGGAGCACGTCCGGGTCGCCAGGTCAGAATTCGGTTTACC CGATGATTTTGAATACTCAGTTGTACGCAAACATCCAGAGTATTTTAAACTCGTTGATGCTAGAGAGACTAGGAATAAGTACATTGAGCTTGTCGAACGT GATCCGAAGTTAGTAGTATGTGCAATTGAGAAGATTAGGGAAAGAGAATACAGAACCAGAGGATTAGATGCGGAGGATTCTAGGTTTTCCTTCCTGATTG ATTTCCCTCCAGGGTTTAAGATAGGGAAGTACTACAGAATTGCAGTATGGAAATGGCAGAGGGTGCCTTACTGGTCTCCTTACGAGGACATTTCCGGGTA CGATATGAGGTCCATTGAGGCTCAGAAGAGGATGGAGAAGAGGGCTGTAGCGACGATTCACGAGCTGCTGTCGTTGACTGTAGAGAAGAAGATTACGCTG GAGAGGATCGCCCATTTTCGGATGGCAATGAGCTTGCCGAAGAAGCTGAAGGAGTTCTTACTACAGCATCAGGGGATATTCTACATCTCGACGAGAGGGA ATCAAGGGAAGCTGCATACTGTGTTTCTTAGGGAGGCGTATAGGAGAGGGGAGTTGGTAGAGCCGAATGAGTTGTATTTGGCTAGGAGGAAGCTTGGGGA GCTGGTTTTGATGAGTCCTAGGAAGGTTAGTTTCGACAGGGAGTTGGTTAGTTATAGGAGGGATGGAGATGAGGATGATGATAGGGAACGTGTTCGGAGA AGCAGGTATGTTGAAAATGAGGTTGGAGGTGATTGCGGTAAGGGTTTTGATGGGGAAAAGGAGGAGGTGGGTGATTTGATCTCCGATTTGGATAGTGATG ATGAGGATGGTGATTATACAGATAATGAACCTGATATGGACAAAGAGGATGCTTGTGCTACTAAGTAA
AA sequence Show only first row Show all	>Lus10027440 pacid=23144602 polypeptide=Lus10027440 locus=Lus10027440.g ID=Lus10027440.BGIv1.0 annot-version=v1.0 MAAIPALLLRHFKSTATKHLRYMSQSTSIPKKQDRIRDHGYDNYMEVQKKTRRVLKFQSLILPHHNQTIPISRLDGLSRRLGFKQFEAGAFILKFPHIFE VYEHPVQRILFVRLTRKALIQIREEKEALLAQIPEAVVRLRKLVMMSGTGRIRLEHVRVARSEFGLPDDFEYSVVRKHPEYFKLVDARETRNKYIELVER DPKLVVCAIEKIREREYRTRGLDAEDSRFSFLIDFPPGFKIGKYYRIAVWKWQRVPYWSPYEDISGYDMRSIEAQKRMEKRAVATIHELLSLTVEKKITL ERIAHFRMAMSLPKKLKEFLLQHQGIFYISTRGNQGKLHTVFLREAYRRGELVEPNELYLARRKLGELVLMSPRKVSFDRELVSYRRDGDEDDDRERVRR SRYVENEVGGDCGKGFDGEKEEVGDLISDLDSDDEDGDYTDNEPDMDKEDACATK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33495		RPD1	ROOT PRIMORDIUM DEFECTIVE 1, U...		Lus10027440 [exp]	0	1
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10038933 [exp]	19.9	0.7032
AT3G07870			F-box and associated interacti...		Lus10012358 [exp]	69.0	0.6948
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10007287 [exp]	175.6	0.6114
AT1G54310			S-adenosyl-L-methionine-depend...		Lus10001763 [exp]	218.7	0.6281

Compare expression of checked genes

Lus10027440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.