Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07270 645 / 0 XBAT33 XB3 ortholog 3 in Arabidopsis thaliana (.1) AT5G57740 388 / 3e-130 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT2G28840 146 / 2e-38 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT5G02620 71 / 9e-13 ATANK1, ANK1 ankyrin-like1 (.1) AT5G20350 67 / 1e-11 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT3G04710 67 / 2e-11 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT4G19150 64 / 2e-11 Ankyrin repeat family protein (.1.2) AT3G12360 66 / 3e-11 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT5G60070 66 / 4e-11 ankyrin repeat family protein (.1) AT2G31820 63 / 2e-10 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005754 [exp] 858 / 0 AT5G07270 753 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Lus10019974 [exp] 392 / 1e-131 AT5G57740 630 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Lus10015503 [exp] 386 / 3e-128 AT5G57740 614 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Lus10016561 [exp] 155 / 7e-42 AT2G28840 640 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10040829 [exp] 118 / 5e-29 AT2G28840 546 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10003260 [exp] 70 / 1e-12 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10006559 [exp] 69 / 3e-12 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10003748 [exp] 67 / 2e-11 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1) Lus10038108 [exp] 64 / 1e-10 AT5G20350 839 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G141400 [exp] 709 / 0 AT5G07270 795 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Potri.012G139100 [exp] 696 / 0 AT5G07270 782 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Potri.018G098400 [exp] 403 / 5e-136 AT5G57740 611 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.006G176600 [exp] 399 / 2e-134 AT5G57740 597 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.001G238800 [exp] 152 / 1e-40 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.009G030000 [exp] 143 / 2e-37 AT2G28840 619 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.002G213200 [exp] 71 / 7e-13 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.018G042200 [exp] 70 / 1e-12 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.013G042300 [exp] 69 / 3e-12 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.010G185200 [exp] 67 / 1e-11 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10027441 pacid=23144498 polypeptide=Lus10027441 locus=Lus10027441.g ID=Lus10027441.BGIv1.0 annot-version=v1.0 ATGCTCCGCCTCCGGCGAGAGGCTGGTATCGGCGGGGAGAGACGGCCGTCTCGGCGAGACGGCGATCTAGTGGAAGCCAAGATGCTCCTGGATTGCAATC CTTGCCTCGCTAAGTACTCCACCTTCGGCGGCCTCAACTCTCCTCTCCATTTCGCCGCCGCCAAAGGCCACAACGAGATTGTGGCGTTGTTGCTTGAAAA CGGAGCCGATGTCAATTCAAGGAATTACTGCGGCCAGACGGCATTGATGCAAGCTTGTAGATATGGACACTGGGAGGTTGTACAGACTCTTCTTCTGTTC AGATGTAATGTTATGAGAGCAGATTATCTCAGTGGAAGGACTGCTCTTCATTTTGCAGCTGTAAATGGACACGCGAGATGTCTGAGACTTGTTGTTTCGG ATTTTTTTCCTAGTGCTCCGTTCGATCTTGCAGAAAATGATGCGGGGGATTCTGCTGGTGTGAAGGCTAGCCAACTGTCCAAGTTTGTAAATAAGGCAGC TGATGGTGGCATAACTGCTCTTCATATGGCTGCATTGAACGGCTATTTCGACTGTGTACAGCTTCTACTCGACCTTCATGCAAATGTGTCGGCTGTGACA TTTCATTATGGAACAACGATGGATTTAATTGGAGCTGGAAGTACACCGTTGCATTATGCTGCTTGTGGGGGGAACTTAAAATGTTGTCAGGTTCTCCTTG CAAGACGTGCCAGTCGAATTTCATTGAATTGTAACGGGTGGCTACCCGTTGATGTGGCTAGGATGTGGGGTCGTCACTGGCTTGAACCTTTGCTGACACC GAATTCTGATTCTATCATCCCACGATTCCCTCAATCTAGTTACTTATCGTTGCCCCTTCTAAGTGTGCTTAACATAGCAAGAGAGCATGGGATGCAATAC TCAACATCCTCTGACGATCCGGACACTTGTGCTGTTTGCCTAGAGAGACAGTGTAATGTGGCTGCTGAAGGATGTGGGCACGAGCTCTGTGTAAGATGTG CACTTTACCTCTGCTCAACGAGCAACATGCCAACCGAAATGTCTGGGCAACCCGGTTCAATCCCGTGTCCTCTCTGCAGGCATGGAATCGTCTCCTTTGT CAAATTACCAGGTTCCCCAGCAAAAGAACTCAAGCTCTCGATGTCCCTTAGCCTCTGTAACCCTTGCATTCTCCATCCTCGCGACGACCGGCCAGCATGT GTACCCGAGATCCGAAAGAACCGGGTGGCCTCGGTTTCTTCGGACTACCTCTGCCCGGTGACTTGCAGCCCGTTCCCTTCCGTGGCGATGCCCTCATGCA CCTGCAAAAATGGTCCTTGCCCGTCGTTTGAACCTGAATCAGCTGAATCGGCAGGGGAATCCCCCCGTCGCTCGCAATCTGGGCCCGTAGACCGAGATGA TAAACTGGAAGCAACAGGATTGGAGAATCAGAAGACGACTTGTTCAAGCATTTTTTGGAGCAGCAGACGAAGCTGCAGCCGCGAGCATCGATGCAATTCT GAGATTAATGCATGA
AA sequence Show only first row Show all	>Lus10027441 pacid=23144498 polypeptide=Lus10027441 locus=Lus10027441.g ID=Lus10027441.BGIv1.0 annot-version=v1.0 MLRLRREAGIGGERRPSRRDGDLVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF RCNVMRADYLSGRTALHFAAVNGHARCLRLVVSDFFPSAPFDLAENDAGDSAGVKASQLSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT FHYGTTMDLIGAGSTPLHYAACGGNLKCCQVLLARRASRISLNCNGWLPVDVARMWGRHWLEPLLTPNSDSIIPRFPQSSYLSLPLLSVLNIAREHGMQY STSSDDPDTCAVCLERQCNVAAEGCGHELCVRCALYLCSTSNMPTEMSGQPGSIPCPLCRHGIVSFVKLPGSPAKELKLSMSLSLCNPCILHPRDDRPAC VPEIRKNRVASVSSDYLCPVTCSPFPSVAMPSCTCKNGPCPSFEPESAESAGESPRRSQSGPVDRDDKLEATGLENQKTTCSSIFWSSRRSCSREHRCNS EINA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Lus10027441 [exp]	0	1
AT3G49800			BSD domain-containing protein ...		Lus10019271 [exp]	1.7	0.8584
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10020512 [exp]	2.0	0.8494
AT4G35830		ACO1	aconitase 1 (.1.2)		Lus10028405 [exp]	2.8	0.8217
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10031797 [exp]	11.5	0.7900
AT2G33700			Protein phosphatase 2C family ...		Lus10030731 [exp]	11.6	0.7951
AT5G01960			RING/U-box superfamily protein...		Lus10011027 [exp]	12.0	0.8187
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10036739 [exp]	19.0	0.8125
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10000883 [exp]	19.3	0.8037
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	21.4	0.7924
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	22.1	0.7986

Compare expression of checked genes

Lus10027441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.