Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62040 204 / 7e-68 BFT brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT5G03840 200 / 6e-66 TFL-1, TFL1 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT2G27550 198 / 3e-65 ATC centroradialis (.1) AT1G65480 155 / 3e-48 FT FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT4G20370 147 / 3e-45 TSF TWIN SISTER OF FT, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT1G18100 133 / 1e-39 MFT, E12A11 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005753 [exp] 295 / 2e-103 AT5G62040 241 / 5e-82 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10020600 [exp] 202 / 8e-67 AT2G27550 263 / 3e-91 centroradialis (.1) Lus10004886 [exp] 201 / 2e-66 AT2G27550 267 / 2e-92 centroradialis (.1) Lus10021372 [exp] 193 / 3e-63 AT5G03840 267 / 1e-92 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10043385 [exp] 191 / 3e-62 AT2G27550 259 / 2e-89 centroradialis (.1) Lus10013532 [exp] 167 / 3e-53 AT1G65480 278 / 6e-97 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10004452 [exp] 166 / 4e-50 AT1G65480 270 / 1e-90 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10004884 [exp] 153 / 2e-47 AT2G27550 218 / 3e-73 centroradialis (.1) Lus10019541 [exp] 151 / 6e-47 AT2G27550 188 / 5e-62 centroradialis (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G165100 [exp] 214 / 1e-71 AT2G27550 293 / 7e-103 centroradialis (.1) Potri.004G203900 [exp] 206 / 1e-68 AT2G27550 286 / 4e-100 centroradialis (.1) Potri.015G141300 [exp] 180 / 1e-58 AT5G62040 217 / 1e-73 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.008G077700 [exp] 167 / 4e-53 AT1G65480 257 / 8e-89 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179700 [exp] 162 / 3e-51 AT1G65480 286 / 2e-100 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.015G041000 [exp] 137 / 2e-41 AT1G18100 291 / 2e-102 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179900 [exp] 62 / 4e-13 AT1G65480 132 / 6e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179801 [exp] 62 / 7e-13 AT1G65480 133 / 3e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01161 [flax] [poplar] PBP Phosphatidylethanolamine-binding protein
Representative CDS sequence Show only first row Show all	>Lus10027442 pacid=23144618 polypeptide=Lus10027442 locus=Lus10027442.g ID=Lus10027442.BGIv1.0 annot-version=v1.0 ATGGCAAGAGGAGGAGGAGGAGGAGGAGGGATGGATCCATTGGCAGTAGGAAGAGTGGTGGGGGAAGTAGTGGATGTGTTCATTCCAAGCGTGAGAATGA ACGTCACTTACAACTCCAACAAGCTTGTTTGCAATGGCCATGAGTTGATGCCGGCTCTCATCTCTTCCAAACCTCGTGTCGACATCTCCGGCGACGATTT GCGCTCTGCTTACACACTCATCATGACTGATCCGGACTATCCAAGCCCTAGTGATCCTTACCTAAGAGAGCATCTTCATTGGATGGTCACCGACATTCCA GGGACGACAGATGCTTCATTCGGTAAAGAGGTGGTGAGCTACGAGATTCCTCGGCCGGTGGTGGGGATCCACCGCTACGTGTTTGTACTGTTCAAGCAAG CAAGAGGGCGACAGACGGTGAGGGCGCCGTCGTCGTCCAGCAGGGACTGCTTCAACACACGGAGGTTCTCCGAGGAGAATGGGTTGGGTCTCCCCGTCGC CGCCGTCTATTTCAATGCCCAACGTGAAACCGCCGCCAGAAAACGCTAA
AA sequence Show only first row Show all	>Lus10027442 pacid=23144618 polypeptide=Lus10027442 locus=Lus10027442.g ID=Lus10027442.BGIv1.0 annot-version=v1.0 MARGGGGGGGMDPLAVGRVVGEVVDVFIPSVRMNVTYNSNKLVCNGHELMPALISSKPRVDISGDDLRSAYTLIMTDPDYPSPSDPYLREHLHWMVTDIP GTTDASFGKEVVSYEIPRPVVGIHRYVFVLFKQARGRQTVRAPSSSSRDCFNTRRFSEENGLGLPVAAVYFNAQRETAARKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62040		BFT	brother of FT and TFL1, PEBP (...		Lus10027442 [exp]	0	1
AT3G59010		PME61, PME35	pectin methylesterase 61 (.1)		Lus10026729 [exp]	2.0	0.8890
					Lus10014195 [exp]	6.1	0.8939
					Lus10043242 [exp]	6.3	0.7933
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10009583 [exp]	7.5	0.8903
AT4G31920	GARP	ARR10	response regulator 10 (.1)		Lus10025044 [exp]	9.2	0.8902
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10024938 [exp]	11.9	0.7462
AT1G71530			Protein kinase superfamily pro...		Lus10001470 [exp]	14.3	0.8848
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008441 [exp]	15.5	0.8836
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10042155 [exp]	17.0	0.8669
AT5G52170	HD	HDG7	homeodomain GLABROUS 7 (.1)		Lus10035095 [exp]	17.3	0.8754

Compare expression of checked genes

Lus10027442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.