Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005752 [exp] 197 / 4e-66 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G140800 [exp] 78 / 5e-19 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027443 pacid=23144444 polypeptide=Lus10027443 locus=Lus10027443.g ID=Lus10027443.BGIv1.0 annot-version=v1.0 ATGGACGACTCCGGTAGCAGCACCACCAACCACAACCACAACAACAACAACAACAACCGTATATGGACTAACGAGAAGCACCTGAATTTCTTGAACTCGC TGGAGGCCACCTTCGTCCGCACAATGCTAATCGAAAACAACAATAATTACTCGTCGACTCGCCACCCCCGCCACAGCTACGAGCACGATCTCCGACTCGA TCGGTACTTGCCGGATAGTTTGGAGTCGACTCTTGACTCCACAACAGACAGGCCTAAAAAGTCTGCCACCGCCTCAGCTGACCATAGGAGATCAAGGAGA TTATCACTTTCATCATCTGGGAGCACTACTCGATCTCAAATGACTCAGAATTCAAATTCGTCGCATGATCAGGTTGTCCCACAGCTCAGCATCAGAAGCA ATGATAAACAAACAGCTGCTGCTGATTGA
AA sequence Show only first row Show all	>Lus10027443 pacid=23144444 polypeptide=Lus10027443 locus=Lus10027443.g ID=Lus10027443.BGIv1.0 annot-version=v1.0 MDDSGSSTTNHNHNNNNNNRIWTNEKHLNFLNSLEATFVRTMLIENNNNYSSTRHPRHSYEHDLRLDRYLPDSLESTLDSTTDRPKKSATASADHRRSRR LSLSSSGSTTRSQMTQNSNSSHDQVVPQLSIRSNDKQTAAAD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027443 [exp]	0	1
					Lus10005752 [exp]	1.0	0.9118
AT3G20810		JMJ30, JMJD5	2-oxoglutarate (2OG) and Fe(II...		Lus10031247 [exp]	4.2	0.8343
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10035240 [exp]	4.2	0.7512
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10015720 [exp]	5.5	0.8321
					Lus10014061 [exp]	6.9	0.8025
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10036419 [exp]	6.9	0.8141
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014219 [exp]	7.7	0.7493
AT2G14080			Disease resistance protein (TI...		Lus10023330 [exp]	8.8	0.7712
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10032498 [exp]	8.8	0.7692
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10037559 [exp]	9.5	0.7893

Compare expression of checked genes

Lus10027443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.