Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52200 96 / 8e-25 AtI-2 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005751 [exp] 238 / 3e-80 AT5G52200 127 / 3e-37 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2) Lus10014992 [exp] 140 / 6e-42 AT5G52200 122 / 5e-35 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2) Lus10038872 [exp] 136 / 5e-40 AT5G52200 118 / 3e-33 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G140500 [exp] 169 / 2e-53 AT5G52200 123 / 9e-36 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2) Potri.012G138600 [exp] 137 / 3e-41 AT5G52200 137 / 2e-41 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04979 [flax] [poplar] IPP-2 Protein phosphatase inhibitor 2 (IPP-2)
Representative CDS sequence Show only first row Show all	>Lus10027444 pacid=23144478 polypeptide=Lus10027444 locus=Lus10027444.g ID=Lus10027444.BGIv1.0 annot-version=v1.0 ATGGTGAATAAAGAACTCCCCGACGTGCTATTTGGCTCAGAAATGAAGGGACGAAGGTCGCGTGTAAGATGGGATGAAGATAATTTGGGGGAGATTGAAG CTAATAAGCCGGTGAGACAAAAGATTACTGAACCTAAGACACCATACCACCCAATGCTTGATGACGACGATGATGATGTTGATGGTACATTATCTCCTAC TAAGGTTAGCTTTGATGAGCCTGTTAATGACGCAACACATGCTGAAAAACTGCGAACTGCCTTAGACACTGTGGCTTCTTCATCAAGTGGGAACTCCAGC AAGCGACCCACTGGCTGGACATCATCCGATGATGAAGCTGACCCTATGGACCAAGATGATGAAGATTGTGAAACGGACAGGGAAGCTTATTTTAGGGAGC TCAGACGAGCACATTATGACGAGTTTTGGAAAGTAAAAGAACTCCTACGCAAGGGTTCTCTCGTCGAGGATGAAGATGCGGAGGCAAACGGCAATGGCAA CGGCAAGCTAAAGAACGGTGGAGGAAGTTCATCTTCGTTAACTGCTGGCGTGAGGGACATCGACATTGAAGATGGTACTGCAACTTCGTCGAACCAACCT GCACCGCCGCCACCACCCCCAGCTAACGGGTCTTAG
AA sequence Show only first row Show all	>Lus10027444 pacid=23144478 polypeptide=Lus10027444 locus=Lus10027444.g ID=Lus10027444.BGIv1.0 annot-version=v1.0 MVNKELPDVLFGSEMKGRRSRVRWDEDNLGEIEANKPVRQKITEPKTPYHPMLDDDDDDVDGTLSPTKVSFDEPVNDATHAEKLRTALDTVASSSSGNSS KRPTGWTSSDDEADPMDQDDEDCETDREAYFRELRRAHYDEFWKVKELLRKGSLVEDEDAEANGNGNGKLKNGGGSSSSLTAGVRDIDIEDGTATSSNQP APPPPPPANGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10027444 [exp]	0	1
					Lus10024538 [exp]	3.6	0.8282
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10032560 [exp]	9.0	0.7987
AT5G19490	CCAAT		Histone superfamily protein (....		Lus10026780 [exp]	11.8	0.8088
					Lus10033601 [exp]	16.3	0.8151
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10037950 [exp]	20.2	0.7713
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10037089 [exp]	20.2	0.8101
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Lus10019406 [exp]	23.2	0.8270
					Lus10022880 [exp]	23.3	0.7787
AT3G58480			calmodulin-binding family prot...		Lus10029323 [exp]	24.7	0.7496
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10022566 [exp]	25.6	0.8133

Compare expression of checked genes

Lus10027444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.